Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
SKA3Q8IX90 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
SKA3Q8IX90 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC14.38□□□□□ -0.11
SKA3Q8IX90 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
SKA3Q8IX90 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
SKA3Q8IX90 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
SKA3Q8IX90 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC14.38□□□□□ -0.11
SKA3Q8IX90 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC14.38□□□□□ -0.11
SKA3Q8IX90 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
SKA3Q8IX90 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
SKA3Q8IX90 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
SKA3Q8IX90 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
SKA3Q8IX90 RELA-227ENST00000615805 2236 ntTSL 5 BASIC14.38□□□□□ -0.11
SKA3Q8IX90 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
SKA3Q8IX90 FOSL2-201ENST00000264716 6708 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
SKA3Q8IX90 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC14.38□□□□□ -0.11
SKA3Q8IX90 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC14.38□□□□□ -0.11
SKA3Q8IX90 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC14.38□□□□□ -0.11
SKA3Q8IX90 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC14.38□□□□□ -0.11
SKA3Q8IX90 ABHD16A-201ENST00000395952 2103 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
SKA3Q8IX90 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
SKA3Q8IX90 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC14.38□□□□□ -0.11
SKA3Q8IX90 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
SKA3Q8IX90 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SKA3Q8IX90 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SKA3Q8IX90 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
SKA3Q8IX90 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC14.37□□□□□ -0.11
SKA3Q8IX90 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
SKA3Q8IX90 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
SKA3Q8IX90 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
SKA3Q8IX90 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
SKA3Q8IX90 TTC6-206ENST00000553443 5833 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
SKA3Q8IX90 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SKA3Q8IX90 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC14.37□□□□□ -0.11
SKA3Q8IX90 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC14.37□□□□□ -0.11
SKA3Q8IX90 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC14.37□□□□□ -0.11
SKA3Q8IX90 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC14.37□□□□□ -0.11
SKA3Q8IX90 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
SKA3Q8IX90 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
SKA3Q8IX90 KRT18P13-201ENST00000400056 1290 ntBASIC14.37□□□□□ -0.11
SKA3Q8IX90 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC14.37□□□□□ -0.11
SKA3Q8IX90 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC14.37□□□□□ -0.11
SKA3Q8IX90 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC14.37□□□□□ -0.11
SKA3Q8IX90 SPCS2P4-201ENST00000436160 681 ntBASIC14.37□□□□□ -0.11
SKA3Q8IX90 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC14.37□□□□□ -0.11
SKA3Q8IX90 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC14.37□□□□□ -0.11
SKA3Q8IX90 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC14.37□□□□□ -0.11
SKA3Q8IX90 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC14.37□□□□□ -0.11
SKA3Q8IX90 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC14.37□□□□□ -0.11
SKA3Q8IX90 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC14.37□□□□□ -0.11
SKA3Q8IX90 AC008267.7-201ENST00000624570 1194 ntBASIC14.37□□□□□ -0.11
SKA3Q8IX90 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC14.37□□□□□ -0.11
SKA3Q8IX90 AC105339.1-204ENST00000636249 355 ntBASIC14.37□□□□□ -0.11
SKA3Q8IX90 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
SKA3Q8IX90 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
SKA3Q8IX90 MYB-201ENST00000316528 3571 ntTSL 5 BASIC14.37□□□□□ -0.11
SKA3Q8IX90 MYB-241ENST00000616088 3573 ntTSL 5 BASIC14.37□□□□□ -0.11
SKA3Q8IX90 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
SKA3Q8IX90 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
SKA3Q8IX90 U82695.1-201ENST00000635752 1889 ntBASIC14.37□□□□□ -0.11
SKA3Q8IX90 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
SKA3Q8IX90 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
SKA3Q8IX90 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC14.37□□□□□ -0.11
SKA3Q8IX90 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC14.37□□□□□ -0.11
SKA3Q8IX90 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SKA3Q8IX90 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SKA3Q8IX90 ALK-201ENST00000389048 6220 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SKA3Q8IX90 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
SKA3Q8IX90 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
SKA3Q8IX90 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC14.37□□□□□ -0.11
SKA3Q8IX90 CYP2T1P-202ENST00000641596 2535 ntBASIC14.37□□□□□ -0.11
SKA3Q8IX90 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SKA3Q8IX90 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SKA3Q8IX90 AC006449.6-201ENST00000612330 2296 ntBASIC14.36□□□□□ -0.11
SKA3Q8IX90 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SKA3Q8IX90 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
SKA3Q8IX90 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC14.36□□□□□ -0.11
SKA3Q8IX90 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
SKA3Q8IX90 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
SKA3Q8IX90 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
SKA3Q8IX90 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC14.36□□□□□ -0.11
SKA3Q8IX90 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
SKA3Q8IX90 GPAT4-201ENST00000396987 6298 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SKA3Q8IX90 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SKA3Q8IX90 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SKA3Q8IX90 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC14.36□□□□□ -0.11
SKA3Q8IX90 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SKA3Q8IX90 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SKA3Q8IX90 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC14.36□□□□□ -0.11
SKA3Q8IX90 AC211486.1-202ENST00000416371 468 ntBASIC14.36□□□□□ -0.11
SKA3Q8IX90 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC14.36□□□□□ -0.11
SKA3Q8IX90 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC14.36□□□□□ -0.11
SKA3Q8IX90 AC211476.1-201ENST00000503899 468 ntBASIC14.36□□□□□ -0.11
SKA3Q8IX90 CCND1-203ENST00000536559 553 ntTSL 3 BASIC14.36□□□□□ -0.11
SKA3Q8IX90 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC14.36□□□□□ -0.11
SKA3Q8IX90 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC14.36□□□□□ -0.11
SKA3Q8IX90 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC14.36□□□□□ -0.11
SKA3Q8IX90 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC14.36□□□□□ -0.11
SKA3Q8IX90 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC14.36□□□□□ -0.11
SKA3Q8IX90 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC14.36□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 38.4 ms