Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC88AQ3V6T2 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC88AQ3V6T2 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC88AQ3V6T2 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
CCDC88AQ3V6T2 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC19.47■□□□□ 0.71
CCDC88AQ3V6T2 LINC01144-201ENST00000626198 1710 ntBASIC19.47■□□□□ 0.71
CCDC88AQ3V6T2 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC88AQ3V6T2 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC19.47■□□□□ 0.71
CCDC88AQ3V6T2 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC88AQ3V6T2 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC88AQ3V6T2 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC88AQ3V6T2 AP4M1-201ENST00000359593 1817 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC88AQ3V6T2 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC19.46■□□□□ 0.71
CCDC88AQ3V6T2 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
CCDC88AQ3V6T2 OS9-205ENST00000413095 1660 ntTSL 2 BASIC19.46■□□□□ 0.71
CCDC88AQ3V6T2 AC022211.2-201ENST00000585075 2527 ntBASIC19.46■□□□□ 0.71
CCDC88AQ3V6T2 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC19.46■□□□□ 0.71
CCDC88AQ3V6T2 OLR1-203ENST00000432556 950 ntTSL 2 BASIC19.46■□□□□ 0.71
CCDC88AQ3V6T2 BANF1-202ENST00000445560 946 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC88AQ3V6T2 AC129492.3-201ENST00000498285 460 ntAPPRIS P1 TSL 4 BASIC19.46■□□□□ 0.71
CCDC88AQ3V6T2 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC88AQ3V6T2 SPCS2P2-201ENST00000603270 608 ntBASIC19.46■□□□□ 0.71
CCDC88AQ3V6T2 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC19.46■□□□□ 0.71
CCDC88AQ3V6T2 SNX1-214ENST00000625244 324 ntTSL 5 BASIC19.46■□□□□ 0.71
CCDC88AQ3V6T2 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
CCDC88AQ3V6T2 ME2P1-201ENST00000426028 1970 ntBASIC19.46■□□□□ 0.71
CCDC88AQ3V6T2 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC19.46■□□□□ 0.71
CCDC88AQ3V6T2 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC19.46■□□□□ 0.71
CCDC88AQ3V6T2 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC19.46■□□□□ 0.71
CCDC88AQ3V6T2 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC19.46■□□□□ 0.71
CCDC88AQ3V6T2 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC88AQ3V6T2 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC19.46■□□□□ 0.71
CCDC88AQ3V6T2 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC88AQ3V6T2 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
CCDC88AQ3V6T2 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
CCDC88AQ3V6T2 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC19.46■□□□□ 0.7
CCDC88AQ3V6T2 NPPC-201ENST00000295440 500 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC88AQ3V6T2 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC88AQ3V6T2 C1orf159-201ENST00000379319 1097 ntAPPRIS P3 TSL 5 BASIC19.45■□□□□ 0.7
CCDC88AQ3V6T2 MIR1202-201ENST00000408529 83 ntBASIC19.45■□□□□ 0.7
CCDC88AQ3V6T2 SCARNA20.5-201ENST00000516991 142 ntBASIC19.45■□□□□ 0.7
CCDC88AQ3V6T2 RPL8-205ENST00000527914 551 ntTSL 3 BASIC19.45■□□□□ 0.7
CCDC88AQ3V6T2 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC19.45■□□□□ 0.7
CCDC88AQ3V6T2 AC011474.2-201ENST00000579268 543 ntTSL 3 BASIC19.45■□□□□ 0.7
CCDC88AQ3V6T2 IGFLR1-211ENST00000592889 782 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC88AQ3V6T2 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC19.45■□□□□ 0.7
CCDC88AQ3V6T2 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC88AQ3V6T2 AP003392.4-202ENST00000526453 1359 ntTSL 2 BASIC19.45■□□□□ 0.7
CCDC88AQ3V6T2 FLJ38576-201ENST00000623820 2459 ntBASIC19.45■□□□□ 0.7
CCDC88AQ3V6T2 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC88AQ3V6T2 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC88AQ3V6T2 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
CCDC88AQ3V6T2 KRT8P19-201ENST00000551916 1455 ntBASIC19.45■□□□□ 0.7
CCDC88AQ3V6T2 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC88AQ3V6T2 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC88AQ3V6T2 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC88AQ3V6T2 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC88AQ3V6T2 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC19.45■□□□□ 0.7
CCDC88AQ3V6T2 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC88AQ3V6T2 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC19.45■□□□□ 0.7
CCDC88AQ3V6T2 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC19.45■□□□□ 0.7
CCDC88AQ3V6T2 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC88AQ3V6T2 COX6A2-201ENST00000287490 440 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC88AQ3V6T2 OARD1-212ENST00000482515 832 ntTSL 2 BASIC19.45■□□□□ 0.7
CCDC88AQ3V6T2 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC88AQ3V6T2 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC19.45■□□□□ 0.7
CCDC88AQ3V6T2 AL031600.1-201ENST00000563610 570 ntTSL 4 BASIC19.45■□□□□ 0.7
CCDC88AQ3V6T2 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC19.45■□□□□ 0.7
CCDC88AQ3V6T2 PAM16-215ENST00000577031 548 ntTSL 4 BASIC19.45■□□□□ 0.7
CCDC88AQ3V6T2 AC008736.2-201ENST00000587554 516 ntTSL 2 BASIC19.45■□□□□ 0.7
CCDC88AQ3V6T2 ZNFX1-AS1_1.1-201ENST00000615787 198 ntBASIC19.45■□□□□ 0.7
CCDC88AQ3V6T2 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC88AQ3V6T2 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC88AQ3V6T2 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC19.45■□□□□ 0.7
CCDC88AQ3V6T2 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC88AQ3V6T2 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
CCDC88AQ3V6T2 ZNF815P-201ENST00000421890 1352 ntTSL 2 BASIC19.45■□□□□ 0.7
CCDC88AQ3V6T2 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC88AQ3V6T2 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC88AQ3V6T2 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC88AQ3V6T2 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC88AQ3V6T2 REXO1L8P-201ENST00000604378 1897 ntBASIC19.44■□□□□ 0.7
CCDC88AQ3V6T2 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC88AQ3V6T2 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC19.44■□□□□ 0.7
CCDC88AQ3V6T2 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC19.44■□□□□ 0.7
CCDC88AQ3V6T2 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC19.44■□□□□ 0.7
CCDC88AQ3V6T2 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC19.44■□□□□ 0.7
CCDC88AQ3V6T2 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC88AQ3V6T2 GPR17-202ENST00000393018 1177 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC88AQ3V6T2 BLCAP-204ENST00000397135 685 ntAPPRIS P1 TSL 4 BASIC19.44■□□□□ 0.7
CCDC88AQ3V6T2 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC19.44■□□□□ 0.7
CCDC88AQ3V6T2 AC022903.1-201ENST00000579327 469 ntTSL 2 BASIC19.44■□□□□ 0.7
CCDC88AQ3V6T2 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC88AQ3V6T2 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC19.44■□□□□ 0.7
CCDC88AQ3V6T2 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC19.44■□□□□ 0.7
CCDC88AQ3V6T2 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC88AQ3V6T2 CRCP-201ENST00000338592 1393 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC88AQ3V6T2 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC88AQ3V6T2 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC88AQ3V6T2 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 43.9 ms