Protein–RNA interactions for Protein: Q33E94

RFX4, Transcription factor RFX4, humanhuman

Predictions only

Length 735 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX4Q33E94 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
RFX4Q33E94 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC15.12■□□□□ 0.01
RFX4Q33E94 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC15.12■□□□□ 0.01
RFX4Q33E94 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
RFX4Q33E94 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
RFX4Q33E94 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
RFX4Q33E94 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
RFX4Q33E94 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC15.12■□□□□ 0.01
RFX4Q33E94 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
RFX4Q33E94 PAN3-AS1-201ENST00000563843 1351 ntBASIC15.11■□□□□ 0.01
RFX4Q33E94 IL12RB2-206ENST00000544434 3782 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
RFX4Q33E94 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
RFX4Q33E94 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
RFX4Q33E94 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
RFX4Q33E94 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
RFX4Q33E94 CUL7-203ENST00000535468 5504 ntAPPRIS ALT2 TSL 2 BASIC15.11■□□□□ 0.01
RFX4Q33E94 RIMS3-202ENST00000372684 7235 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
RFX4Q33E94 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC15.11■□□□□ 0.01
RFX4Q33E94 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
RFX4Q33E94 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC15.11■□□□□ 0.01
RFX4Q33E94 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC15.11■□□□□ 0.01
RFX4Q33E94 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC15.11■□□□□ 0.01
RFX4Q33E94 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
RFX4Q33E94 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
RFX4Q33E94 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
RFX4Q33E94 AC026396.1-201ENST00000419388 421 ntBASIC15.11■□□□□ 0.01
RFX4Q33E94 AC087163.2-201ENST00000457299 853 ntBASIC15.11■□□□□ 0.01
RFX4Q33E94 ARTN-206ENST00000472435 402 ntTSL 3 BASIC15.11■□□□□ 0.01
RFX4Q33E94 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
RFX4Q33E94 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC15.11■□□□□ 0.01
RFX4Q33E94 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC15.11■□□□□ 0.01
RFX4Q33E94 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC15.11■□□□□ 0.01
RFX4Q33E94 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC15.11■□□□□ 0.01
RFX4Q33E94 CYP2A7P1-201ENST00000595391 815 ntBASIC15.11■□□□□ 0.01
RFX4Q33E94 AP001350.2-201ENST00000625104 1094 ntBASIC15.11■□□□□ 0.01
RFX4Q33E94 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC15.11■□□□□ 0.01
RFX4Q33E94 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
RFX4Q33E94 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
RFX4Q33E94 PHLDB1-223ENST00000600882 5479 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
RFX4Q33E94 NEURL1-201ENST00000369780 4314 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
RFX4Q33E94 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC15.11■□□□□ 0.01
RFX4Q33E94 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
RFX4Q33E94 OPA1-204ENST00000361828 6381 ntAPPRIS ALT1 TSL 5 BASIC15.11■□□□□ 0.01
RFX4Q33E94 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC15.11■□□□□ 0.01
RFX4Q33E94 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC15.11■□□□□ 0.01
RFX4Q33E94 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC15.11■□□□□ 0.01
RFX4Q33E94 AC008677.1-201ENST00000519230 1561 ntBASIC15.11■□□□□ 0.01
RFX4Q33E94 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
RFX4Q33E94 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC15.11■□□□□ 0.01
RFX4Q33E94 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
RFX4Q33E94 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
RFX4Q33E94 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
RFX4Q33E94 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC15.1■□□□□ 0.01
RFX4Q33E94 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC15.1■□□□□ 0.01
RFX4Q33E94 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC15.1■□□□□ 0.01
RFX4Q33E94 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC15.1■□□□□ 0.01
RFX4Q33E94 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
RFX4Q33E94 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
RFX4Q33E94 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
RFX4Q33E94 KNSTRN-202ENST00000416151 1899 ntTSL 3 BASIC15.1■□□□□ 0.01
RFX4Q33E94 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
RFX4Q33E94 AC138035.3-201ENST00000622706 2791 ntBASIC15.1■□□□□ 0.01
RFX4Q33E94 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
RFX4Q33E94 TRAF6-201ENST00000348124 2558 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
RFX4Q33E94 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC15.1■□□□□ 0.01
RFX4Q33E94 MYO15B-237ENST00000642007 4893 ntBASIC15.1■□□□□ 0.01
RFX4Q33E94 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
RFX4Q33E94 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
RFX4Q33E94 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
RFX4Q33E94 PI4KAP1-204ENST00000612579 1703 ntBASIC15.1■□□□□ 0.01
RFX4Q33E94 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
RFX4Q33E94 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC15.1■□□□□ 0.01
RFX4Q33E94 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC15.1■□□□□ 0.01
RFX4Q33E94 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC15.1■□□□□ 0.01
RFX4Q33E94 MSRA-206ENST00000521209 814 ntTSL 3 BASIC15.1■□□□□ 0.01
RFX4Q33E94 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC15.1■□□□□ 0.01
RFX4Q33E94 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC15.1■□□□□ 0.01
RFX4Q33E94 MTDHP4-201ENST00000600287 670 ntBASIC15.1■□□□□ 0.01
RFX4Q33E94 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC15.1■□□□□ 0.01
RFX4Q33E94 AL121772.3-201ENST00000610840 674 ntBASIC15.1■□□□□ 0.01
RFX4Q33E94 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC15.1■□□□□ 0.01
RFX4Q33E94 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
RFX4Q33E94 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC15.1■□□□□ 0.01
RFX4Q33E94 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC15.1■□□□□ 0.01
RFX4Q33E94 RTEL1-205ENST00000370018 4955 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
RFX4Q33E94 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
RFX4Q33E94 USP19-205ENST00000398898 4474 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
RFX4Q33E94 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
RFX4Q33E94 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC15.09■□□□□ 0.01
RFX4Q33E94 CASC3-201ENST00000264645 4116 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
RFX4Q33E94 GDAP1L1-201ENST00000342560 2265 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
RFX4Q33E94 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
RFX4Q33E94 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC15.09■□□□□ 0.01
RFX4Q33E94 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
RFX4Q33E94 DDHD2-205ENST00000520272 4532 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
RFX4Q33E94 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
RFX4Q33E94 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
RFX4Q33E94 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC15.09■□□□□ 0.01
RFX4Q33E94 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
RFX4Q33E94 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 48.9 ms