Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 AC074138.1-201ENST00000611182 1303 ntBASIC11.38□□□□□ -0.59
PRKDCP78527 IL3RA-201ENST00000331035 1706 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
PRKDCP78527 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
PRKDCP78527 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC11.38□□□□□ -0.59
PRKDCP78527 GPBAR1-203ENST00000521462 1465 ntAPPRIS P1 TSL 2 BASIC11.38□□□□□ -0.59
PRKDCP78527 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC11.38□□□□□ -0.59
PRKDCP78527 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC11.38□□□□□ -0.59
PRKDCP78527 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC11.38□□□□□ -0.59
PRKDCP78527 CRYBA4-201ENST00000354760 811 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
PRKDCP78527 AC133961.1-201ENST00000503085 762 ntTSL 3 BASIC11.38□□□□□ -0.59
PRKDCP78527 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC11.38□□□□□ -0.59
PRKDCP78527 TMEM218-205ENST00000527271 706 ntAPPRIS P1 TSL 2 BASIC11.38□□□□□ -0.59
PRKDCP78527 SIRT3-210ENST00000529382 1225 ntTSL 2 BASIC11.38□□□□□ -0.59
PRKDCP78527 IFT20-206ENST00000578122 834 ntTSL 2 BASIC11.38□□□□□ -0.59
PRKDCP78527 PARD6G-AS1-205ENST00000589574 647 ntTSL 3 BASIC11.38□□□□□ -0.59
PRKDCP78527 AC244157.2-201ENST00000616239 1006 ntBASIC11.38□□□□□ -0.59
PRKDCP78527 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
PRKDCP78527 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
PRKDCP78527 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC11.38□□□□□ -0.59
PRKDCP78527 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
PRKDCP78527 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC11.38□□□□□ -0.59
PRKDCP78527 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC11.38□□□□□ -0.59
PRKDCP78527 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC11.38□□□□□ -0.59
PRKDCP78527 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
PRKDCP78527 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC11.38□□□□□ -0.59
PRKDCP78527 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
PRKDCP78527 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC11.38□□□□□ -0.59
PRKDCP78527 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC11.37□□□□□ -0.59
PRKDCP78527 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC11.37□□□□□ -0.59
PRKDCP78527 ANAPC11-202ENST00000357385 881 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
PRKDCP78527 KRTAP10-3-201ENST00000391620 971 ntAPPRIS P1 BASIC11.37□□□□□ -0.59
PRKDCP78527 MPV17-205ENST00000402310 906 ntTSL 5 BASIC11.37□□□□□ -0.59
PRKDCP78527 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC11.37□□□□□ -0.59
PRKDCP78527 ALG1L2-201ENST00000425059 969 ntAPPRIS P1 TSL 5 BASIC11.37□□□□□ -0.59
PRKDCP78527 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
PRKDCP78527 DNM1P51-201ENST00000558149 522 ntBASIC11.37□□□□□ -0.59
PRKDCP78527 NPTN-204ENST00000562924 1094 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
PRKDCP78527 AC023824.4-202ENST00000569557 849 ntTSL 3 BASIC11.37□□□□□ -0.59
PRKDCP78527 AC005696.1-201ENST00000572876 443 ntTSL 2 BASIC11.37□□□□□ -0.59
PRKDCP78527 DIO1-215ENST00000610607 796 ntTSL 5 BASIC11.37□□□□□ -0.59
PRKDCP78527 AC103691.2-201ENST00000618824 433 ntBASIC11.37□□□□□ -0.59
PRKDCP78527 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC11.37□□□□□ -0.59
PRKDCP78527 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
PRKDCP78527 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC11.37□□□□□ -0.59
PRKDCP78527 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
PRKDCP78527 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
PRKDCP78527 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
PRKDCP78527 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
PRKDCP78527 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
PRKDCP78527 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
PRKDCP78527 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC11.37□□□□□ -0.59
PRKDCP78527 OXNAD1-202ENST00000435829 1643 ntAPPRIS ALT2 TSL 5 BASIC11.37□□□□□ -0.59
PRKDCP78527 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC11.37□□□□□ -0.59
PRKDCP78527 BCAS2-201ENST00000369541 1299 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
PRKDCP78527 IGHV3-53-201ENST00000390627 571 ntAPPRIS P1 BASIC11.37□□□□□ -0.59
PRKDCP78527 TMEM219-202ENST00000414689 1024 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
PRKDCP78527 AC004522.1-201ENST00000419978 654 ntBASIC11.37□□□□□ -0.59
PRKDCP78527 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC11.37□□□□□ -0.59
PRKDCP78527 IMPA1-203ENST00000449740 1180 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
PRKDCP78527 KRT18P43-201ENST00000469825 1281 ntBASIC11.37□□□□□ -0.59
PRKDCP78527 ATP6V0A2-207ENST00000544833 1013 ntTSL 2 BASIC11.37□□□□□ -0.59
PRKDCP78527 TMEM219-204ENST00000566848 1292 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
PRKDCP78527 AC020922.3-201ENST00000595064 547 ntBASIC11.37□□□□□ -0.59
PRKDCP78527 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC11.37□□□□□ -0.59
PRKDCP78527 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC11.37□□□□□ -0.59
PRKDCP78527 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
PRKDCP78527 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
PRKDCP78527 RHBDF1P1-201ENST00000427504 1941 ntBASIC11.37□□□□□ -0.59
PRKDCP78527 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
PRKDCP78527 SLC38A5-213ENST00000620913 1993 ntAPPRIS P1 TSL 5 BASIC11.37□□□□□ -0.59
PRKDCP78527 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
PRKDCP78527 COMP-202ENST00000425807 2292 ntTSL 2 BASIC11.37□□□□□ -0.59
PRKDCP78527 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
PRKDCP78527 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
PRKDCP78527 NUP210P1-201ENST00000357061 876 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
PRKDCP78527 HDAC8-204ENST00000373560 819 ntTSL 3 BASIC11.37□□□□□ -0.59
PRKDCP78527 PTGR1-209ENST00000538962 1200 ntTSL 2 BASIC11.37□□□□□ -0.59
PRKDCP78527 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC11.37□□□□□ -0.59
PRKDCP78527 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC11.37□□□□□ -0.59
PRKDCP78527 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC11.37□□□□□ -0.59
PRKDCP78527 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC11.37□□□□□ -0.59
PRKDCP78527 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
PRKDCP78527 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC11.37□□□□□ -0.59
PRKDCP78527 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
PRKDCP78527 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
PRKDCP78527 SLC41A3-211ENST00000508835 1480 ntTSL 2 BASIC11.37□□□□□ -0.59
PRKDCP78527 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC11.37□□□□□ -0.59
PRKDCP78527 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC11.37□□□□□ -0.59
PRKDCP78527 AC004987.2-201ENST00000395959 1148 ntBASIC11.37□□□□□ -0.59
PRKDCP78527 ACTBP7-201ENST00000418351 1124 ntBASIC11.37□□□□□ -0.59
PRKDCP78527 SUMF2-210ENST00000437307 947 ntTSL 2 BASIC11.37□□□□□ -0.59
PRKDCP78527 AC006158.1-201ENST00000610661 249 ntBASIC11.37□□□□□ -0.59
PRKDCP78527 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC11.37□□□□□ -0.59
PRKDCP78527 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC11.37□□□□□ -0.59
PRKDCP78527 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC11.36□□□□□ -0.59
PRKDCP78527 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC11.36□□□□□ -0.59
PRKDCP78527 MRPS7-201ENST00000245539 1406 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
PRKDCP78527 FAM153A-220ENST00000513554 1437 ntAPPRIS ALT2 TSL 5 BASIC11.36□□□□□ -0.59
PRKDCP78527 MYL6-219ENST00000551589 1438 ntAPPRIS ALT1 TSL 2 BASIC11.36□□□□□ -0.59
PRKDCP78527 TNFSF11-201ENST00000239849 911 ntTSL 5 BASIC11.36□□□□□ -0.59
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms