Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 AC023310.1-201ENST00000554836 735 ntBASIC26.5■■□□□ 1.83
CUX1P39880 CHMP4BP1-201ENST00000556017 588 ntBASIC26.5■■□□□ 1.83
CUX1P39880 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC26.5■■□□□ 1.83
CUX1P39880 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC26.5■■□□□ 1.83
CUX1P39880 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC26.5■■□□□ 1.83
CUX1P39880 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
CUX1P39880 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC26.5■■□□□ 1.83
CUX1P39880 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
CUX1P39880 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC26.5■■□□□ 1.83
CUX1P39880 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC26.5■■□□□ 1.83
CUX1P39880 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
CUX1P39880 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC26.5■■□□□ 1.83
CUX1P39880 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC26.5■■□□□ 1.83
CUX1P39880 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC26.5■■□□□ 1.83
CUX1P39880 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC26.5■■□□□ 1.83
CUX1P39880 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC26.5■■□□□ 1.83
CUX1P39880 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC26.5■■□□□ 1.83
CUX1P39880 KLK11-201ENST00000319720 1198 ntAPPRIS ALT2 TSL 1 (best) BASIC26.49■■□□□ 1.83
CUX1P39880 TSPO-201ENST00000329563 955 ntAPPRIS P1 TSL 3 BASIC26.49■■□□□ 1.83
CUX1P39880 ELK2AP-201ENST00000392510 1007 ntBASIC26.49■■□□□ 1.83
CUX1P39880 HSPB1P2-201ENST00000448722 546 ntBASIC26.49■■□□□ 1.83
CUX1P39880 AC004898.1-201ENST00000451057 766 ntBASIC26.49■■□□□ 1.83
CUX1P39880 ANAPC15-214ENST00000543587 883 ntAPPRIS ALT1 TSL 1 (best) BASIC26.49■■□□□ 1.83
CUX1P39880 TSPO-206ENST00000583777 636 ntTSL 1 (best) BASIC26.49■■□□□ 1.83
CUX1P39880 ECM1P1-201ENST00000604092 1279 ntBASIC26.49■■□□□ 1.83
CUX1P39880 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC26.49■■□□□ 1.83
CUX1P39880 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC26.49■■□□□ 1.83
CUX1P39880 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC26.49■■□□□ 1.83
CUX1P39880 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC26.49■■□□□ 1.83
CUX1P39880 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC26.49■■□□□ 1.83
CUX1P39880 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
CUX1P39880 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC26.49■■□□□ 1.83
CUX1P39880 ME2P1-201ENST00000426028 1970 ntBASIC26.49■■□□□ 1.83
CUX1P39880 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC26.49■■□□□ 1.83
CUX1P39880 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC26.49■■□□□ 1.83
CUX1P39880 TK1-203ENST00000588734 1681 ntTSL 2 BASIC26.49■■□□□ 1.83
CUX1P39880 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
CUX1P39880 CLIC1-206ENST00000375779 1127 ntAPPRIS P1 TSL 5 BASIC26.49■■□□□ 1.83
CUX1P39880 EPDR1-203ENST00000425345 947 ntAPPRIS ALT2 TSL 1 (best) BASIC26.49■■□□□ 1.83
CUX1P39880 REEP1-202ENST00000453231 940 ntTSL 2 BASIC26.49■■□□□ 1.83
CUX1P39880 BX284668.4-201ENST00000453917 508 ntBASIC26.49■■□□□ 1.83
CUX1P39880 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC26.49■■□□□ 1.83
CUX1P39880 AC021594.1-201ENST00000587174 636 ntTSL 3 BASIC26.49■■□□□ 1.83
CUX1P39880 CYGB-203ENST00000589145 788 ntTSL 3 BASIC26.49■■□□□ 1.83
CUX1P39880 UBL5-208ENST00000593087 320 ntTSL 3 BASIC26.49■■□□□ 1.83
CUX1P39880 AC243967.2-201ENST00000601409 567 ntTSL 4 BASIC26.49■■□□□ 1.83
CUX1P39880 LINC01278-203ENST00000608788 820 ntTSL 5 BASIC26.49■■□□□ 1.83
CUX1P39880 LINC01278-207ENST00000610234 555 ntTSL 4 BASIC26.49■■□□□ 1.83
CUX1P39880 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC26.49■■□□□ 1.83
CUX1P39880 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC26.49■■□□□ 1.83
CUX1P39880 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
CUX1P39880 PCMTD2-207ENST00000609372 1321 ntTSL 4 BASIC26.48■■□□□ 1.83
CUX1P39880 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC26.48■■□□□ 1.83
CUX1P39880 LRRFIP1P1-201ENST00000498774 2246 ntBASIC26.48■■□□□ 1.83
CUX1P39880 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC26.48■■□□□ 1.83
CUX1P39880 AC018892.3-201ENST00000623986 2499 ntBASIC26.48■■□□□ 1.83
CUX1P39880 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC26.48■■□□□ 1.83
CUX1P39880 CTNNBIP1-202ENST00000377258 852 ntAPPRIS P1 TSL 3 BASIC26.48■■□□□ 1.83
CUX1P39880 C1orf159-201ENST00000379319 1097 ntAPPRIS P3 TSL 5 BASIC26.48■■□□□ 1.83
CUX1P39880 Z84485.1-202ENST00000499560 1230 ntTSL 1 (best) BASIC26.48■■□□□ 1.83
CUX1P39880 RETN-203ENST00000629642 400 ntTSL 5 BASIC26.48■■□□□ 1.83
CUX1P39880 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC26.48■■□□□ 1.83
CUX1P39880 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
CUX1P39880 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC26.48■■□□□ 1.83
CUX1P39880 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
CUX1P39880 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC26.47■■□□□ 1.83
CUX1P39880 FAH-201ENST00000261755 1471 ntAPPRIS P1 TSL 5 BASIC26.47■■□□□ 1.83
CUX1P39880 AC138028.6-201ENST00000616106 1482 ntBASIC26.47■■□□□ 1.83
CUX1P39880 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC26.47■■□□□ 1.83
CUX1P39880 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC26.47■■□□□ 1.83
CUX1P39880 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
CUX1P39880 MB-205ENST00000406324 582 ntAPPRIS P1 TSL 2 BASIC26.47■■□□□ 1.83
CUX1P39880 AL157902.1-202ENST00000425010 763 ntTSL 3 BASIC26.47■■□□□ 1.83
CUX1P39880 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC26.47■■□□□ 1.83
CUX1P39880 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC26.47■■□□□ 1.83
CUX1P39880 RPL28-208ENST00000559463 852 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
CUX1P39880 AP005019.2-201ENST00000615104 511 ntBASIC26.47■■□□□ 1.83
CUX1P39880 AC006453.4-201ENST00000636949 1252 ntBASIC26.47■■□□□ 1.83
CUX1P39880 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC26.47■■□□□ 1.83
CUX1P39880 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC26.47■■□□□ 1.83
CUX1P39880 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC26.47■■□□□ 1.83
CUX1P39880 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC26.47■■□□□ 1.83
CUX1P39880 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
CUX1P39880 FOS-202ENST00000535987 1402 ntTSL 2 BASIC26.47■■□□□ 1.83
CUX1P39880 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
CUX1P39880 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
CUX1P39880 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC26.46■■□□□ 1.83
CUX1P39880 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC26.46■■□□□ 1.83
CUX1P39880 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
CUX1P39880 BTBD6P1-201ENST00000412176 1267 ntBASIC26.46■■□□□ 1.83
CUX1P39880 AC244250.1-201ENST00000438185 451 ntTSL 2 BASIC26.46■■□□□ 1.83
CUX1P39880 CHIA-209ENST00000483391 1188 ntTSL 1 (best) BASIC26.46■■□□□ 1.83
CUX1P39880 AC129492.3-201ENST00000498285 460 ntAPPRIS P1 TSL 4 BASIC26.46■■□□□ 1.83
CUX1P39880 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC26.46■■□□□ 1.83
CUX1P39880 TUBB6-210ENST00000590967 430 ntTSL 3 BASIC26.46■■□□□ 1.83
CUX1P39880 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC26.46■■□□□ 1.83
CUX1P39880 FXYD3-202ENST00000346446 1320 ntTSL 2 BASIC26.46■■□□□ 1.83
CUX1P39880 KRT8P35-201ENST00000483942 1338 ntBASIC26.46■■□□□ 1.83
CUX1P39880 CCNA1-204ENST00000630422 1751 ntAPPRIS P1 TSL 2 BASIC26.46■■□□□ 1.83
CUX1P39880 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC26.46■■□□□ 1.83
Retrieved 100 of 98,524 protein–RNA pairs in 80.4 ms