Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 AC010327.4-202ENST00000591484 748 ntBASIC19.07■□□□□ 0.64
HMGB1P09429 AC026979.3-201ENST00000607315 403 ntBASIC19.07■□□□□ 0.64
HMGB1P09429 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC19.07■□□□□ 0.64
HMGB1P09429 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
HMGB1P09429 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC19.07■□□□□ 0.64
HMGB1P09429 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
HMGB1P09429 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
HMGB1P09429 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
HMGB1P09429 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC19.07■□□□□ 0.64
HMGB1P09429 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC19.07■□□□□ 0.64
HMGB1P09429 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
HMGB1P09429 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
HMGB1P09429 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC19.07■□□□□ 0.64
HMGB1P09429 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
HMGB1P09429 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
HMGB1P09429 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
HMGB1P09429 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC19.06■□□□□ 0.64
HMGB1P09429 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
HMGB1P09429 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC19.06■□□□□ 0.64
HMGB1P09429 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
HMGB1P09429 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
HMGB1P09429 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
HMGB1P09429 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
HMGB1P09429 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
HMGB1P09429 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
HMGB1P09429 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
HMGB1P09429 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
HMGB1P09429 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
HMGB1P09429 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
HMGB1P09429 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
HMGB1P09429 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
HMGB1P09429 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
HMGB1P09429 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
HMGB1P09429 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC19.06■□□□□ 0.64
HMGB1P09429 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
HMGB1P09429 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC19.06■□□□□ 0.64
HMGB1P09429 AC004461.1-201ENST00000412461 403 ntBASIC19.06■□□□□ 0.64
HMGB1P09429 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC19.06■□□□□ 0.64
HMGB1P09429 RPS8P6-201ENST00000426177 609 ntBASIC19.06■□□□□ 0.64
HMGB1P09429 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC19.06■□□□□ 0.64
HMGB1P09429 MAX-210ENST00000555419 765 ntTSL 5 BASIC19.06■□□□□ 0.64
HMGB1P09429 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
HMGB1P09429 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC19.06■□□□□ 0.64
HMGB1P09429 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
HMGB1P09429 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC19.06■□□□□ 0.64
HMGB1P09429 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
HMGB1P09429 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC19.06■□□□□ 0.64
HMGB1P09429 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
HMGB1P09429 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
HMGB1P09429 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
HMGB1P09429 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC19.06■□□□□ 0.64
HMGB1P09429 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
HMGB1P09429 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
HMGB1P09429 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC19.06■□□□□ 0.64
HMGB1P09429 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC19.05■□□□□ 0.64
HMGB1P09429 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC19.05■□□□□ 0.64
HMGB1P09429 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC19.05■□□□□ 0.64
HMGB1P09429 HLA-DQB2-231ENST00000435145 2026 ntBASIC19.05■□□□□ 0.64
HMGB1P09429 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
HMGB1P09429 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
HMGB1P09429 AC105917.1-201ENST00000506637 2539 ntBASIC19.05■□□□□ 0.64
HMGB1P09429 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
HMGB1P09429 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC19.05■□□□□ 0.64
HMGB1P09429 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
HMGB1P09429 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC19.05■□□□□ 0.64
HMGB1P09429 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC19.05■□□□□ 0.64
HMGB1P09429 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
HMGB1P09429 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC19.05■□□□□ 0.64
HMGB1P09429 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
HMGB1P09429 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
HMGB1P09429 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC19.05■□□□□ 0.64
HMGB1P09429 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC19.05■□□□□ 0.64
HMGB1P09429 AL627223.1-201ENST00000416693 442 ntBASIC19.05■□□□□ 0.64
HMGB1P09429 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC19.05■□□□□ 0.64
HMGB1P09429 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC19.05■□□□□ 0.64
HMGB1P09429 AL139010.1-201ENST00000454878 894 ntBASIC19.05■□□□□ 0.64
HMGB1P09429 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC19.05■□□□□ 0.64
HMGB1P09429 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC19.05■□□□□ 0.64
HMGB1P09429 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
HMGB1P09429 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC19.05■□□□□ 0.64
HMGB1P09429 AC004835.2-201ENST00000603762 682 ntBASIC19.05■□□□□ 0.64
HMGB1P09429 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
HMGB1P09429 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC19.05■□□□□ 0.64
HMGB1P09429 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
HMGB1P09429 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
HMGB1P09429 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
HMGB1P09429 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
HMGB1P09429 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC19.05■□□□□ 0.64
HMGB1P09429 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC19.05■□□□□ 0.64
HMGB1P09429 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
HMGB1P09429 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC19.05■□□□□ 0.64
HMGB1P09429 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
HMGB1P09429 ZBTB45P2-201ENST00000452245 1531 ntBASIC19.05■□□□□ 0.64
HMGB1P09429 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
HMGB1P09429 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
HMGB1P09429 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC19.04■□□□□ 0.64
HMGB1P09429 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
HMGB1P09429 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
HMGB1P09429 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
HMGB1P09429 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms