Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HOXC11O43248 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC16.4■□□□□ 0.22
HOXC11O43248 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
HOXC11O43248 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HOXC11O43248 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
HOXC11O43248 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
HOXC11O43248 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HOXC11O43248 DEK-201ENST00000244776 1441 ntTSL 2 BASIC16.4■□□□□ 0.22
HOXC11O43248 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HOXC11O43248 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC16.4■□□□□ 0.22
HOXC11O43248 AL512384.1-201ENST00000406683 331 ntBASIC16.4■□□□□ 0.22
HOXC11O43248 AZGP1P1-201ENST00000411909 902 ntBASIC16.4■□□□□ 0.22
HOXC11O43248 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
HOXC11O43248 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC16.4■□□□□ 0.22
HOXC11O43248 MYCLP2-201ENST00000449268 967 ntBASIC16.4■□□□□ 0.22
HOXC11O43248 GIMAP3P-201ENST00000495150 836 ntBASIC16.4■□□□□ 0.22
HOXC11O43248 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
HOXC11O43248 AC123567.1-201ENST00000548294 1261 ntBASIC16.4■□□□□ 0.22
HOXC11O43248 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC16.4■□□□□ 0.22
HOXC11O43248 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC16.4■□□□□ 0.22
HOXC11O43248 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC16.4■□□□□ 0.22
HOXC11O43248 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
HOXC11O43248 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC16.4■□□□□ 0.22
HOXC11O43248 IGHV3-72-202ENST00000621503 303 ntBASIC16.4■□□□□ 0.22
HOXC11O43248 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HOXC11O43248 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
HOXC11O43248 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC16.4■□□□□ 0.22
HOXC11O43248 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC16.4■□□□□ 0.22
HOXC11O43248 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC16.4■□□□□ 0.22
HOXC11O43248 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HOXC11O43248 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC16.4■□□□□ 0.22
HOXC11O43248 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
HOXC11O43248 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC16.4■□□□□ 0.22
HOXC11O43248 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
HOXC11O43248 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC16.39■□□□□ 0.21
HOXC11O43248 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC16.39■□□□□ 0.21
HOXC11O43248 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.21
HOXC11O43248 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
HOXC11O43248 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
HOXC11O43248 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC16.39■□□□□ 0.21
HOXC11O43248 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
HOXC11O43248 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
HOXC11O43248 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC16.39■□□□□ 0.21
HOXC11O43248 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
HOXC11O43248 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC16.39■□□□□ 0.21
HOXC11O43248 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
HOXC11O43248 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC16.39■□□□□ 0.21
HOXC11O43248 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
HOXC11O43248 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
HOXC11O43248 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
HOXC11O43248 U91328.1-201ENST00000437528 223 ntBASIC16.39■□□□□ 0.21
HOXC11O43248 ELK1P1-201ENST00000485699 580 ntBASIC16.39■□□□□ 0.21
HOXC11O43248 FADS2-205ENST00000517839 469 ntTSL 3 BASIC16.39■□□□□ 0.21
HOXC11O43248 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC16.39■□□□□ 0.21
HOXC11O43248 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC16.39■□□□□ 0.21
HOXC11O43248 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
HOXC11O43248 RARRES2P5-201ENST00000564013 466 ntBASIC16.39■□□□□ 0.21
HOXC11O43248 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
HOXC11O43248 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC16.39■□□□□ 0.21
HOXC11O43248 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
HOXC11O43248 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC16.39■□□□□ 0.21
HOXC11O43248 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
HOXC11O43248 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC16.39■□□□□ 0.21
HOXC11O43248 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC16.39■□□□□ 0.21
HOXC11O43248 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
HOXC11O43248 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
HOXC11O43248 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
HOXC11O43248 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
HOXC11O43248 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
HOXC11O43248 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC16.39■□□□□ 0.21
HOXC11O43248 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
HOXC11O43248 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC16.38■□□□□ 0.21
HOXC11O43248 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC16.38■□□□□ 0.21
HOXC11O43248 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC16.38■□□□□ 0.21
HOXC11O43248 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
HOXC11O43248 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
HOXC11O43248 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
HOXC11O43248 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC16.38■□□□□ 0.21
HOXC11O43248 DRC7-201ENST00000336825 2680 ntAPPRIS ALT2 TSL 2 BASIC16.38■□□□□ 0.21
HOXC11O43248 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC16.38■□□□□ 0.21
HOXC11O43248 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
HOXC11O43248 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
HOXC11O43248 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
HOXC11O43248 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC16.38■□□□□ 0.21
HOXC11O43248 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
HOXC11O43248 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC16.38■□□□□ 0.21
HOXC11O43248 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
HOXC11O43248 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
HOXC11O43248 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC16.38■□□□□ 0.21
HOXC11O43248 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
HOXC11O43248 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
HOXC11O43248 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC16.38■□□□□ 0.21
HOXC11O43248 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC16.38■□□□□ 0.21
HOXC11O43248 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC16.38■□□□□ 0.21
HOXC11O43248 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC16.38■□□□□ 0.21
HOXC11O43248 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC16.38■□□□□ 0.21
HOXC11O43248 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
HOXC11O43248 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC16.38■□□□□ 0.21
HOXC11O43248 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
HOXC11O43248 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 42.3 ms