Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 EML1-201ENST00000262233 4535 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
HDAC3O15379 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC15.78■□□□□ 0.12
HDAC3O15379 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
HDAC3O15379 POLL-217ENST00000628479 1953 ntTSL 5 BASIC15.78■□□□□ 0.12
HDAC3O15379 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
HDAC3O15379 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
HDAC3O15379 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
HDAC3O15379 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
HDAC3O15379 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC15.78■□□□□ 0.12
HDAC3O15379 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
HDAC3O15379 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC15.78■□□□□ 0.12
HDAC3O15379 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC15.78■□□□□ 0.12
HDAC3O15379 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC15.78■□□□□ 0.12
HDAC3O15379 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
HDAC3O15379 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC15.78■□□□□ 0.12
HDAC3O15379 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
HDAC3O15379 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
HDAC3O15379 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
HDAC3O15379 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
HDAC3O15379 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC15.78■□□□□ 0.12
HDAC3O15379 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
HDAC3O15379 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC15.78■□□□□ 0.12
HDAC3O15379 MRPL20P1-201ENST00000400819 433 ntBASIC15.78■□□□□ 0.12
HDAC3O15379 HMGA1P7-201ENST00000406908 502 ntBASIC15.78■□□□□ 0.12
HDAC3O15379 TSPY19P-201ENST00000418461 509 ntBASIC15.78■□□□□ 0.12
HDAC3O15379 TSPY18P-201ENST00000441642 509 ntBASIC15.78■□□□□ 0.12
HDAC3O15379 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC15.78■□□□□ 0.12
HDAC3O15379 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC15.78■□□□□ 0.12
HDAC3O15379 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC15.78■□□□□ 0.12
HDAC3O15379 MIR3652-201ENST00000579335 131 ntBASIC15.78■□□□□ 0.12
HDAC3O15379 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC15.78■□□□□ 0.12
HDAC3O15379 AL365330.1-201ENST00000607459 531 ntBASIC15.78■□□□□ 0.12
HDAC3O15379 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
HDAC3O15379 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
HDAC3O15379 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
HDAC3O15379 DMTN-206ENST00000443491 2415 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
HDAC3O15379 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
HDAC3O15379 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC15.78■□□□□ 0.12
HDAC3O15379 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
HDAC3O15379 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
HDAC3O15379 KCNS1-201ENST00000306117 4538 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
HDAC3O15379 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC15.78■□□□□ 0.12
HDAC3O15379 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
HDAC3O15379 RBM47-202ENST00000381793 4816 ntAPPRIS ALT1 TSL 2 BASIC15.78■□□□□ 0.12
HDAC3O15379 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
HDAC3O15379 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC15.78■□□□□ 0.12
HDAC3O15379 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC15.78■□□□□ 0.12
HDAC3O15379 GNS-201ENST00000258145 5122 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
HDAC3O15379 STAT5B-201ENST00000293328 5103 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
HDAC3O15379 EPB41L3-206ENST00000544123 3972 ntAPPRIS ALT2 TSL 2 BASIC15.77■□□□□ 0.12
HDAC3O15379 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC15.77■□□□□ 0.12
HDAC3O15379 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC15.77■□□□□ 0.12
HDAC3O15379 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
HDAC3O15379 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.12
HDAC3O15379 KIAA1841-201ENST00000295031 3116 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
HDAC3O15379 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
HDAC3O15379 CFLAR-204ENST00000341582 2056 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
HDAC3O15379 AC105250.1-201ENST00000509378 2057 ntBASIC15.77■□□□□ 0.12
HDAC3O15379 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC15.77■□□□□ 0.12
HDAC3O15379 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
HDAC3O15379 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC15.77■□□□□ 0.12
HDAC3O15379 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC15.77■□□□□ 0.12
HDAC3O15379 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
HDAC3O15379 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
HDAC3O15379 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
HDAC3O15379 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.12
HDAC3O15379 C8orf49-201ENST00000525043 1968 ntBASIC15.77■□□□□ 0.12
HDAC3O15379 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
HDAC3O15379 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
HDAC3O15379 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
HDAC3O15379 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC15.77■□□□□ 0.12
HDAC3O15379 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC15.77■□□□□ 0.12
HDAC3O15379 SPON1-201ENST00000576479 4837 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
HDAC3O15379 AC090616.6-203ENST00000579186 1945 ntBASIC15.77■□□□□ 0.12
HDAC3O15379 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
HDAC3O15379 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
HDAC3O15379 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.12
HDAC3O15379 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
HDAC3O15379 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC15.77■□□□□ 0.12
HDAC3O15379 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC15.77■□□□□ 0.12
HDAC3O15379 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC15.77■□□□□ 0.12
HDAC3O15379 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC15.77■□□□□ 0.12
HDAC3O15379 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC15.77■□□□□ 0.12
HDAC3O15379 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
HDAC3O15379 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC15.77■□□□□ 0.12
HDAC3O15379 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
HDAC3O15379 OR7E14P-202ENST00000530490 1290 ntBASIC15.77■□□□□ 0.12
HDAC3O15379 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC15.77■□□□□ 0.12
HDAC3O15379 AC091304.2-201ENST00000564639 760 ntBASIC15.77■□□□□ 0.12
HDAC3O15379 ARL16-209ENST00000573715 763 ntTSL 3 BASIC15.77■□□□□ 0.12
HDAC3O15379 OR7E47P-204ENST00000575924 449 ntBASIC15.77■□□□□ 0.12
HDAC3O15379 RMI2-205ENST00000576027 818 ntTSL 2 BASIC15.77■□□□□ 0.12
HDAC3O15379 ARL16-211ENST00000576135 694 ntTSL 3 BASIC15.77■□□□□ 0.12
HDAC3O15379 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC15.77■□□□□ 0.12
HDAC3O15379 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC15.77■□□□□ 0.12
HDAC3O15379 MIR1199-201ENST00000621445 119 ntBASIC15.77■□□□□ 0.12
HDAC3O15379 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC15.77■□□□□ 0.12
HDAC3O15379 CA10-203ENST00000451037 3189 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
HDAC3O15379 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.12
HDAC3O15379 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms