Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
TRIM49D1C9J1S8 PMS2P4-201ENST00000412466 1052 ntBASIC16.26■□□□□ 0.19
TRIM49D1C9J1S8 AC093724.1-201ENST00000448659 1027 ntBASIC16.26■□□□□ 0.19
TRIM49D1C9J1S8 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC16.26■□□□□ 0.19
TRIM49D1C9J1S8 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC16.26■□□□□ 0.19
TRIM49D1C9J1S8 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC16.26■□□□□ 0.19
TRIM49D1C9J1S8 AC012640.2-201ENST00000561606 901 ntBASIC16.26■□□□□ 0.19
TRIM49D1C9J1S8 NT5C-211ENST00000582170 653 ntTSL 3 BASIC16.26■□□□□ 0.19
TRIM49D1C9J1S8 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
TRIM49D1C9J1S8 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
TRIM49D1C9J1S8 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
TRIM49D1C9J1S8 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
TRIM49D1C9J1S8 AC068587.6-202ENST00000641839 5619 ntBASIC16.26■□□□□ 0.19
TRIM49D1C9J1S8 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
TRIM49D1C9J1S8 KCNS1-201ENST00000306117 4538 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
TRIM49D1C9J1S8 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
TRIM49D1C9J1S8 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
TRIM49D1C9J1S8 POLI-208ENST00000579534 6133 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
TRIM49D1C9J1S8 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
TRIM49D1C9J1S8 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
TRIM49D1C9J1S8 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC16.26■□□□□ 0.19
TRIM49D1C9J1S8 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
TRIM49D1C9J1S8 WASHC2C-208ENST00000537517 4417 ntAPPRIS ALT2 TSL 2 BASIC16.26■□□□□ 0.19
TRIM49D1C9J1S8 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
TRIM49D1C9J1S8 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC16.26■□□□□ 0.19
TRIM49D1C9J1S8 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
TRIM49D1C9J1S8 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
TRIM49D1C9J1S8 AC006486.2-201ENST00000624246 2199 ntBASIC16.26■□□□□ 0.19
TRIM49D1C9J1S8 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC16.26■□□□□ 0.19
TRIM49D1C9J1S8 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
TRIM49D1C9J1S8 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
TRIM49D1C9J1S8 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRIM49D1C9J1S8 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRIM49D1C9J1S8 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRIM49D1C9J1S8 PLXNC1-201ENST00000258526 7346 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRIM49D1C9J1S8 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC16.25■□□□□ 0.19
TRIM49D1C9J1S8 UBR5-207ENST00000520539 10297 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRIM49D1C9J1S8 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
TRIM49D1C9J1S8 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
TRIM49D1C9J1S8 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC16.25■□□□□ 0.19
TRIM49D1C9J1S8 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
TRIM49D1C9J1S8 LINC02228-204ENST00000642115 2962 ntBASIC16.25■□□□□ 0.19
TRIM49D1C9J1S8 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
TRIM49D1C9J1S8 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRIM49D1C9J1S8 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRIM49D1C9J1S8 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRIM49D1C9J1S8 HNRNPDP1-201ENST00000439535 754 ntBASIC16.25■□□□□ 0.19
TRIM49D1C9J1S8 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
TRIM49D1C9J1S8 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
TRIM49D1C9J1S8 CXCL1P1-201ENST00000502804 216 ntBASIC16.25■□□□□ 0.19
TRIM49D1C9J1S8 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC16.25■□□□□ 0.19
TRIM49D1C9J1S8 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC16.25■□□□□ 0.19
TRIM49D1C9J1S8 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC16.25■□□□□ 0.19
TRIM49D1C9J1S8 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
TRIM49D1C9J1S8 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC16.25■□□□□ 0.19
TRIM49D1C9J1S8 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRIM49D1C9J1S8 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
TRIM49D1C9J1S8 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRIM49D1C9J1S8 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
TRIM49D1C9J1S8 ARHGEF6-202ENST00000370620 4764 ntTSL 2 BASIC16.25■□□□□ 0.19
TRIM49D1C9J1S8 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
TRIM49D1C9J1S8 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC16.25■□□□□ 0.19
TRIM49D1C9J1S8 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC16.25■□□□□ 0.19
TRIM49D1C9J1S8 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC16.25■□□□□ 0.19
TRIM49D1C9J1S8 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRIM49D1C9J1S8 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC16.25■□□□□ 0.19
TRIM49D1C9J1S8 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC16.25■□□□□ 0.19
TRIM49D1C9J1S8 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRIM49D1C9J1S8 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC16.24■□□□□ 0.19
TRIM49D1C9J1S8 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
TRIM49D1C9J1S8 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
TRIM49D1C9J1S8 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC16.24■□□□□ 0.19
TRIM49D1C9J1S8 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
TRIM49D1C9J1S8 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
TRIM49D1C9J1S8 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC16.24■□□□□ 0.19
TRIM49D1C9J1S8 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
TRIM49D1C9J1S8 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
TRIM49D1C9J1S8 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
TRIM49D1C9J1S8 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
TRIM49D1C9J1S8 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TRIM49D1C9J1S8 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC16.24■□□□□ 0.19
TRIM49D1C9J1S8 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
TRIM49D1C9J1S8 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TRIM49D1C9J1S8 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC16.24■□□□□ 0.19
TRIM49D1C9J1S8 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
TRIM49D1C9J1S8 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TRIM49D1C9J1S8 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TRIM49D1C9J1S8 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC16.24■□□□□ 0.19
TRIM49D1C9J1S8 MOK-208ENST00000519058 917 ntTSL 2 BASIC16.24■□□□□ 0.19
TRIM49D1C9J1S8 AP002469.2-201ENST00000531724 424 ntBASIC16.24■□□□□ 0.19
TRIM49D1C9J1S8 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
TRIM49D1C9J1S8 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
TRIM49D1C9J1S8 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC16.24■□□□□ 0.19
TRIM49D1C9J1S8 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC16.24■□□□□ 0.19
TRIM49D1C9J1S8 IFNL4P1-201ENST00000607083 540 ntBASIC16.24■□□□□ 0.19
TRIM49D1C9J1S8 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC16.24■□□□□ 0.19
TRIM49D1C9J1S8 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC16.24■□□□□ 0.19
TRIM49D1C9J1S8 PITPNM2-208ENST00000542749 6660 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
TRIM49D1C9J1S8 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TRIM49D1C9J1S8 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 67.3 ms