Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC16.86■□□□□ 0.29
LIMD1Q9UGP4 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC16.86■□□□□ 0.29
LIMD1Q9UGP4 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
LIMD1Q9UGP4 ANKRD19P-201ENST00000338192 862 ntBASIC16.86■□□□□ 0.29
LIMD1Q9UGP4 CDKN1A-202ENST00000373711 793 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
LIMD1Q9UGP4 SGK2-207ENST00000426287 1182 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
LIMD1Q9UGP4 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC16.86■□□□□ 0.29
LIMD1Q9UGP4 ACTBP11-201ENST00000436287 1126 ntBASIC16.86■□□□□ 0.29
LIMD1Q9UGP4 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
LIMD1Q9UGP4 STARD4-205ENST00000505803 803 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
LIMD1Q9UGP4 STARD4-207ENST00000509887 1186 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
LIMD1Q9UGP4 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC16.86■□□□□ 0.29
LIMD1Q9UGP4 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC16.86■□□□□ 0.29
LIMD1Q9UGP4 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC16.86■□□□□ 0.29
LIMD1Q9UGP4 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC16.86■□□□□ 0.29
LIMD1Q9UGP4 USB1-203ENST00000539737 1212 ntTSL 2 BASIC16.86■□□□□ 0.29
LIMD1Q9UGP4 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC16.86■□□□□ 0.29
LIMD1Q9UGP4 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC16.86■□□□□ 0.29
LIMD1Q9UGP4 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC16.86■□□□□ 0.29
LIMD1Q9UGP4 AC107419.1-202ENST00000608735 1081 ntTSL 3 BASIC16.86■□□□□ 0.29
LIMD1Q9UGP4 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC16.86■□□□□ 0.29
LIMD1Q9UGP4 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
LIMD1Q9UGP4 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
LIMD1Q9UGP4 LBHD1-201ENST00000354588 1320 ntAPPRIS P2 TSL 1 (best) BASIC16.86■□□□□ 0.29
LIMD1Q9UGP4 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
LIMD1Q9UGP4 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC16.86■□□□□ 0.29
LIMD1Q9UGP4 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
LIMD1Q9UGP4 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
LIMD1Q9UGP4 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
LIMD1Q9UGP4 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
LIMD1Q9UGP4 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC16.86■□□□□ 0.29
LIMD1Q9UGP4 KRT8P39-201ENST00000396270 1433 ntBASIC16.86■□□□□ 0.29
LIMD1Q9UGP4 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC16.86■□□□□ 0.29
LIMD1Q9UGP4 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
LIMD1Q9UGP4 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
LIMD1Q9UGP4 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC16.86■□□□□ 0.29
LIMD1Q9UGP4 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
LIMD1Q9UGP4 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
LIMD1Q9UGP4 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC16.86■□□□□ 0.29
LIMD1Q9UGP4 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
LIMD1Q9UGP4 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
LIMD1Q9UGP4 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC16.85■□□□□ 0.29
LIMD1Q9UGP4 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
LIMD1Q9UGP4 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC16.85■□□□□ 0.29
LIMD1Q9UGP4 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
LIMD1Q9UGP4 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
LIMD1Q9UGP4 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC16.85■□□□□ 0.29
LIMD1Q9UGP4 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC16.85■□□□□ 0.29
LIMD1Q9UGP4 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC16.85■□□□□ 0.29
LIMD1Q9UGP4 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC16.85■□□□□ 0.29
LIMD1Q9UGP4 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC16.85■□□□□ 0.29
LIMD1Q9UGP4 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
LIMD1Q9UGP4 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
LIMD1Q9UGP4 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
LIMD1Q9UGP4 UBE2T-201ENST00000367274 922 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
LIMD1Q9UGP4 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC16.85■□□□□ 0.29
LIMD1Q9UGP4 BOLA2P3-201ENST00000404566 256 ntBASIC16.85■□□□□ 0.29
LIMD1Q9UGP4 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC16.85■□□□□ 0.29
LIMD1Q9UGP4 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC16.85■□□□□ 0.29
LIMD1Q9UGP4 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
LIMD1Q9UGP4 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC16.85■□□□□ 0.29
LIMD1Q9UGP4 BTNL10-201ENST00000595971 695 ntBASIC16.85■□□□□ 0.29
LIMD1Q9UGP4 MIR8072-201ENST00000614241 80 ntBASIC16.85■□□□□ 0.29
LIMD1Q9UGP4 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC16.85■□□□□ 0.29
LIMD1Q9UGP4 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
LIMD1Q9UGP4 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC16.85■□□□□ 0.29
LIMD1Q9UGP4 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
LIMD1Q9UGP4 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
LIMD1Q9UGP4 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
LIMD1Q9UGP4 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC16.85■□□□□ 0.29
LIMD1Q9UGP4 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
LIMD1Q9UGP4 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC16.85■□□□□ 0.29
LIMD1Q9UGP4 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
LIMD1Q9UGP4 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC16.85■□□□□ 0.29
LIMD1Q9UGP4 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
LIMD1Q9UGP4 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
LIMD1Q9UGP4 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
LIMD1Q9UGP4 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
LIMD1Q9UGP4 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC16.85■□□□□ 0.29
LIMD1Q9UGP4 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
LIMD1Q9UGP4 CDC14C-201ENST00000428251 1719 ntBASIC16.84■□□□□ 0.29
LIMD1Q9UGP4 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
LIMD1Q9UGP4 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
LIMD1Q9UGP4 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC16.84■□□□□ 0.29
LIMD1Q9UGP4 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
LIMD1Q9UGP4 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
LIMD1Q9UGP4 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
LIMD1Q9UGP4 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
LIMD1Q9UGP4 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC16.84■□□□□ 0.29
LIMD1Q9UGP4 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
LIMD1Q9UGP4 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC16.84■□□□□ 0.29
LIMD1Q9UGP4 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
LIMD1Q9UGP4 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
LIMD1Q9UGP4 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
LIMD1Q9UGP4 HIST1H2AD-201ENST00000341023 393 ntAPPRIS P1 BASIC16.84■□□□□ 0.29
LIMD1Q9UGP4 IGLV2-23-201ENST00000390306 502 ntAPPRIS P1 BASIC16.84■□□□□ 0.29
LIMD1Q9UGP4 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC16.84■□□□□ 0.29
LIMD1Q9UGP4 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC16.84■□□□□ 0.29
LIMD1Q9UGP4 RAD18-204ENST00000418463 563 ntTSL 4 BASIC16.84■□□□□ 0.29
LIMD1Q9UGP4 RAD18-205ENST00000421052 582 ntTSL 3 BASIC16.84■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 76.6 ms