Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC19.35■□□□□ 0.69
CHMP4CQ96CF2 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC19.35■□□□□ 0.69
CHMP4CQ96CF2 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
CHMP4CQ96CF2 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC19.35■□□□□ 0.69
CHMP4CQ96CF2 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
CHMP4CQ96CF2 TSFM-210ENST00000550559 897 ntTSL 5 BASIC19.35■□□□□ 0.69
CHMP4CQ96CF2 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
CHMP4CQ96CF2 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC19.35■□□□□ 0.69
CHMP4CQ96CF2 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
CHMP4CQ96CF2 RAB34-224ENST00000636513 888 ntTSL 5 BASIC19.35■□□□□ 0.69
CHMP4CQ96CF2 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CHMP4CQ96CF2 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
CHMP4CQ96CF2 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CHMP4CQ96CF2 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
CHMP4CQ96CF2 WSCD1-210ENST00000574946 5884 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
CHMP4CQ96CF2 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC19.35■□□□□ 0.69
CHMP4CQ96CF2 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
CHMP4CQ96CF2 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
CHMP4CQ96CF2 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
CHMP4CQ96CF2 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CHMP4CQ96CF2 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CHMP4CQ96CF2 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
CHMP4CQ96CF2 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
CHMP4CQ96CF2 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
CHMP4CQ96CF2 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CHMP4CQ96CF2 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
CHMP4CQ96CF2 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CHMP4CQ96CF2 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
CHMP4CQ96CF2 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
CHMP4CQ96CF2 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CHMP4CQ96CF2 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC19.34■□□□□ 0.69
CHMP4CQ96CF2 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
CHMP4CQ96CF2 CD81-202ENST00000381036 880 ntTSL 3 BASIC19.34■□□□□ 0.69
CHMP4CQ96CF2 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC19.34■□□□□ 0.69
CHMP4CQ96CF2 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC19.34■□□□□ 0.69
CHMP4CQ96CF2 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CHMP4CQ96CF2 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC19.34■□□□□ 0.69
CHMP4CQ96CF2 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC19.34■□□□□ 0.69
CHMP4CQ96CF2 AC025678.2-201ENST00000562061 970 ntBASIC19.34■□□□□ 0.69
CHMP4CQ96CF2 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC19.34■□□□□ 0.69
CHMP4CQ96CF2 AC026150.2-201ENST00000564693 1156 ntBASIC19.34■□□□□ 0.69
CHMP4CQ96CF2 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CHMP4CQ96CF2 LSM12-202ENST00000585388 942 ntTSL 3 BASIC19.34■□□□□ 0.69
CHMP4CQ96CF2 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
CHMP4CQ96CF2 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
CHMP4CQ96CF2 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC19.34■□□□□ 0.69
CHMP4CQ96CF2 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC19.34■□□□□ 0.69
CHMP4CQ96CF2 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC19.34■□□□□ 0.69
CHMP4CQ96CF2 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
CHMP4CQ96CF2 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CHMP4CQ96CF2 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
CHMP4CQ96CF2 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CHMP4CQ96CF2 PCSK5-205ENST00000545128 9538 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
CHMP4CQ96CF2 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
CHMP4CQ96CF2 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC19.34■□□□□ 0.69
CHMP4CQ96CF2 PRLHR-201ENST00000239032 5446 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CHMP4CQ96CF2 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CHMP4CQ96CF2 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC19.34■□□□□ 0.69
CHMP4CQ96CF2 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CHMP4CQ96CF2 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CHMP4CQ96CF2 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC19.34■□□□□ 0.69
CHMP4CQ96CF2 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
CHMP4CQ96CF2 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
CHMP4CQ96CF2 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.69
CHMP4CQ96CF2 PCDHA10-201ENST00000307360 5254 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
CHMP4CQ96CF2 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
CHMP4CQ96CF2 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.69
CHMP4CQ96CF2 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC19.33■□□□□ 0.69
CHMP4CQ96CF2 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
CHMP4CQ96CF2 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
CHMP4CQ96CF2 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
CHMP4CQ96CF2 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
CHMP4CQ96CF2 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
CHMP4CQ96CF2 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
CHMP4CQ96CF2 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
CHMP4CQ96CF2 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
CHMP4CQ96CF2 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
CHMP4CQ96CF2 MIR648-201ENST00000385046 94 ntBASIC19.33■□□□□ 0.68
CHMP4CQ96CF2 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC19.33■□□□□ 0.68
CHMP4CQ96CF2 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC19.33■□□□□ 0.68
CHMP4CQ96CF2 KRT18P34-201ENST00000488218 1270 ntBASIC19.33■□□□□ 0.68
CHMP4CQ96CF2 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC19.33■□□□□ 0.68
CHMP4CQ96CF2 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC19.33■□□□□ 0.68
CHMP4CQ96CF2 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC19.33■□□□□ 0.68
CHMP4CQ96CF2 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
CHMP4CQ96CF2 AP000842.3-202ENST00000569238 1080 ntBASIC19.33■□□□□ 0.68
CHMP4CQ96CF2 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC19.33■□□□□ 0.68
CHMP4CQ96CF2 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC19.33■□□□□ 0.68
CHMP4CQ96CF2 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC19.33■□□□□ 0.68
CHMP4CQ96CF2 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
CHMP4CQ96CF2 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.68
CHMP4CQ96CF2 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
CHMP4CQ96CF2 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
CHMP4CQ96CF2 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
CHMP4CQ96CF2 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
CHMP4CQ96CF2 AC092364.2-201ENST00000596710 2692 ntBASIC19.33■□□□□ 0.68
CHMP4CQ96CF2 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
CHMP4CQ96CF2 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC19.33■□□□□ 0.68
CHMP4CQ96CF2 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
CHMP4CQ96CF2 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC19.33■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms