Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC15.72■□□□□ 0.11
LMX1AQ8TE12 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
LMX1AQ8TE12 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC15.72■□□□□ 0.11
LMX1AQ8TE12 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
LMX1AQ8TE12 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC15.72■□□□□ 0.11
LMX1AQ8TE12 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC15.72■□□□□ 0.11
LMX1AQ8TE12 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
LMX1AQ8TE12 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
LMX1AQ8TE12 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC15.72■□□□□ 0.11
LMX1AQ8TE12 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC15.71■□□□□ 0.11
LMX1AQ8TE12 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC15.71■□□□□ 0.11
LMX1AQ8TE12 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC15.71■□□□□ 0.11
LMX1AQ8TE12 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
LMX1AQ8TE12 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
LMX1AQ8TE12 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC15.71■□□□□ 0.11
LMX1AQ8TE12 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
LMX1AQ8TE12 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
LMX1AQ8TE12 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC15.71■□□□□ 0.11
LMX1AQ8TE12 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
LMX1AQ8TE12 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.11
LMX1AQ8TE12 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
LMX1AQ8TE12 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
LMX1AQ8TE12 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
LMX1AQ8TE12 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC15.71■□□□□ 0.11
LMX1AQ8TE12 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
LMX1AQ8TE12 AL512384.1-201ENST00000406683 331 ntBASIC15.71■□□□□ 0.11
LMX1AQ8TE12 HIST3H2BA-201ENST00000436555 524 ntBASIC15.71■□□□□ 0.11
LMX1AQ8TE12 ELP6-209ENST00000446787 894 ntTSL 3 BASIC15.71■□□□□ 0.11
LMX1AQ8TE12 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
LMX1AQ8TE12 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC15.71■□□□□ 0.11
LMX1AQ8TE12 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC15.71■□□□□ 0.11
LMX1AQ8TE12 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
LMX1AQ8TE12 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC15.71■□□□□ 0.11
LMX1AQ8TE12 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
LMX1AQ8TE12 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC15.71■□□□□ 0.11
LMX1AQ8TE12 NOP2-220ENST00000545915 630 ntTSL 2 BASIC15.71■□□□□ 0.11
LMX1AQ8TE12 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.11
LMX1AQ8TE12 AC132938.2-201ENST00000579188 680 ntBASIC15.71■□□□□ 0.11
LMX1AQ8TE12 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC15.71■□□□□ 0.11
LMX1AQ8TE12 AL359881.2-201ENST00000602973 570 ntBASIC15.71■□□□□ 0.11
LMX1AQ8TE12 AL591163.1-201ENST00000641757 987 ntBASIC15.71■□□□□ 0.11
LMX1AQ8TE12 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
LMX1AQ8TE12 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC15.71■□□□□ 0.11
LMX1AQ8TE12 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
LMX1AQ8TE12 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC15.71■□□□□ 0.11
LMX1AQ8TE12 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.11
LMX1AQ8TE12 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
LMX1AQ8TE12 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
LMX1AQ8TE12 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
LMX1AQ8TE12 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC15.71■□□□□ 0.11
LMX1AQ8TE12 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
LMX1AQ8TE12 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC15.71■□□□□ 0.1
LMX1AQ8TE12 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.1
LMX1AQ8TE12 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
LMX1AQ8TE12 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
LMX1AQ8TE12 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
LMX1AQ8TE12 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
LMX1AQ8TE12 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
LMX1AQ8TE12 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
LMX1AQ8TE12 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC15.7■□□□□ 0.1
LMX1AQ8TE12 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC15.7■□□□□ 0.1
LMX1AQ8TE12 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
LMX1AQ8TE12 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
LMX1AQ8TE12 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
LMX1AQ8TE12 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
LMX1AQ8TE12 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
LMX1AQ8TE12 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC15.7■□□□□ 0.1
LMX1AQ8TE12 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
LMX1AQ8TE12 AL592424.1-201ENST00000563624 1536 ntBASIC15.7■□□□□ 0.1
LMX1AQ8TE12 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC15.7■□□□□ 0.1
LMX1AQ8TE12 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
LMX1AQ8TE12 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
LMX1AQ8TE12 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
LMX1AQ8TE12 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
LMX1AQ8TE12 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
LMX1AQ8TE12 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
LMX1AQ8TE12 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
LMX1AQ8TE12 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC15.7■□□□□ 0.1
LMX1AQ8TE12 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC15.7■□□□□ 0.1
LMX1AQ8TE12 U91328.1-201ENST00000437528 223 ntBASIC15.7■□□□□ 0.1
LMX1AQ8TE12 GPR53P-205ENST00000457298 1084 ntBASIC15.7■□□□□ 0.1
LMX1AQ8TE12 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
LMX1AQ8TE12 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC15.7■□□□□ 0.1
LMX1AQ8TE12 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC15.7■□□□□ 0.1
LMX1AQ8TE12 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC15.7■□□□□ 0.1
LMX1AQ8TE12 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
LMX1AQ8TE12 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC15.7■□□□□ 0.1
LMX1AQ8TE12 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC15.7■□□□□ 0.1
LMX1AQ8TE12 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC15.7■□□□□ 0.1
LMX1AQ8TE12 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
LMX1AQ8TE12 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
LMX1AQ8TE12 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC15.7■□□□□ 0.1
LMX1AQ8TE12 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
LMX1AQ8TE12 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
LMX1AQ8TE12 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC15.7■□□□□ 0.1
LMX1AQ8TE12 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
LMX1AQ8TE12 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
LMX1AQ8TE12 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
LMX1AQ8TE12 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC15.7■□□□□ 0.1
LMX1AQ8TE12 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC15.7■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms