Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HDAC4P56524 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC16.95■□□□□ 0.3
HDAC4P56524 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC16.95■□□□□ 0.3
HDAC4P56524 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HDAC4P56524 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC16.95■□□□□ 0.3
HDAC4P56524 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC16.95■□□□□ 0.3
HDAC4P56524 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC16.95■□□□□ 0.3
HDAC4P56524 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC16.95■□□□□ 0.3
HDAC4P56524 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
HDAC4P56524 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
HDAC4P56524 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC16.95■□□□□ 0.3
HDAC4P56524 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
HDAC4P56524 AC211486.1-202ENST00000416371 468 ntBASIC16.95■□□□□ 0.3
HDAC4P56524 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC16.95■□□□□ 0.3
HDAC4P56524 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
HDAC4P56524 AC211476.1-201ENST00000503899 468 ntBASIC16.95■□□□□ 0.3
HDAC4P56524 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
HDAC4P56524 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC16.95■□□□□ 0.3
HDAC4P56524 SLC25A39P2-201ENST00000537614 270 ntBASIC16.95■□□□□ 0.3
HDAC4P56524 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC16.95■□□□□ 0.3
HDAC4P56524 MIR4321-201ENST00000592276 80 ntBASIC16.95■□□□□ 0.3
HDAC4P56524 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HDAC4P56524 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
HDAC4P56524 AC010491.1-201ENST00000563101 2797 ntBASIC16.95■□□□□ 0.3
HDAC4P56524 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
HDAC4P56524 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
HDAC4P56524 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HDAC4P56524 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
HDAC4P56524 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HDAC4P56524 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
HDAC4P56524 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HDAC4P56524 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
HDAC4P56524 UXT-AS1-201ENST00000590504 1525 ntBASIC16.95■□□□□ 0.3
HDAC4P56524 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC16.95■□□□□ 0.3
HDAC4P56524 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
HDAC4P56524 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC16.95■□□□□ 0.3
HDAC4P56524 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
HDAC4P56524 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC16.95■□□□□ 0.3
HDAC4P56524 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC16.95■□□□□ 0.3
HDAC4P56524 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
HDAC4P56524 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HDAC4P56524 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HDAC4P56524 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HDAC4P56524 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
HDAC4P56524 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HDAC4P56524 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC16.94■□□□□ 0.3
HDAC4P56524 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC16.94■□□□□ 0.3
HDAC4P56524 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
HDAC4P56524 SUPT20HL2-201ENST00000486479 2409 ntBASIC16.94■□□□□ 0.3
HDAC4P56524 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
HDAC4P56524 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HDAC4P56524 MIR648-201ENST00000385046 94 ntBASIC16.94■□□□□ 0.3
HDAC4P56524 KRT18P13-201ENST00000400056 1290 ntBASIC16.94■□□□□ 0.3
HDAC4P56524 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
HDAC4P56524 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
HDAC4P56524 CCND1-203ENST00000536559 553 ntTSL 3 BASIC16.94■□□□□ 0.3
HDAC4P56524 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HDAC4P56524 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
HDAC4P56524 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC16.94■□□□□ 0.3
HDAC4P56524 AC061975.2-201ENST00000581722 295 ntBASIC16.94■□□□□ 0.3
HDAC4P56524 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC16.94■□□□□ 0.3
HDAC4P56524 AC023511.2-201ENST00000618803 211 ntBASIC16.94■□□□□ 0.3
HDAC4P56524 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
HDAC4P56524 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
HDAC4P56524 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
HDAC4P56524 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HDAC4P56524 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC16.94■□□□□ 0.3
HDAC4P56524 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC16.94■□□□□ 0.3
HDAC4P56524 ME2-201ENST00000321341 9415 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HDAC4P56524 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HDAC4P56524 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC16.94■□□□□ 0.3
HDAC4P56524 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC16.94■□□□□ 0.3
HDAC4P56524 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC16.94■□□□□ 0.3
HDAC4P56524 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC16.93■□□□□ 0.3
HDAC4P56524 AL365203.3-201ENST00000609742 2057 ntBASIC16.93■□□□□ 0.3
HDAC4P56524 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
HDAC4P56524 FRMD5-202ENST00000417257 5011 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HDAC4P56524 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HDAC4P56524 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HDAC4P56524 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
HDAC4P56524 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC16.93■□□□□ 0.3
HDAC4P56524 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC16.93■□□□□ 0.3
HDAC4P56524 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC16.93■□□□□ 0.3
HDAC4P56524 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
HDAC4P56524 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC16.93■□□□□ 0.3
HDAC4P56524 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
HDAC4P56524 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC16.93■□□□□ 0.3
HDAC4P56524 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HDAC4P56524 OR4D1-202ENST00000641449 4925 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
HDAC4P56524 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC16.93■□□□□ 0.3
HDAC4P56524 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC16.93■□□□□ 0.3
HDAC4P56524 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HDAC4P56524 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC16.93■□□□□ 0.3
HDAC4P56524 FAM220BP-201ENST00000377689 816 ntBASIC16.93■□□□□ 0.3
HDAC4P56524 CBR1-202ENST00000399191 838 ntTSL 3 BASIC16.93■□□□□ 0.3
HDAC4P56524 PP14571-201ENST00000404327 934 ntTSL 2 BASIC16.93■□□□□ 0.3
HDAC4P56524 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC16.93■□□□□ 0.3
HDAC4P56524 FAM58DP-201ENST00000428076 619 ntBASIC16.93■□□□□ 0.3
HDAC4P56524 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC16.93■□□□□ 0.3
HDAC4P56524 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC16.93■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms