Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 SH3BP2-207ENST00000503393 9158 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
PKNOX1P55347 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
PKNOX1P55347 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC15.95■□□□□ 0.14
PKNOX1P55347 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC15.95■□□□□ 0.14
PKNOX1P55347 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC15.95■□□□□ 0.14
PKNOX1P55347 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC15.95■□□□□ 0.14
PKNOX1P55347 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC15.95■□□□□ 0.14
PKNOX1P55347 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC15.95■□□□□ 0.14
PKNOX1P55347 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC15.95■□□□□ 0.14
PKNOX1P55347 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC15.95■□□□□ 0.14
PKNOX1P55347 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
PKNOX1P55347 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
PKNOX1P55347 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC15.95■□□□□ 0.14
PKNOX1P55347 TC2N-201ENST00000340892 4708 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
PKNOX1P55347 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
PKNOX1P55347 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
PKNOX1P55347 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC15.95■□□□□ 0.14
PKNOX1P55347 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC15.95■□□□□ 0.14
PKNOX1P55347 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC15.95■□□□□ 0.14
PKNOX1P55347 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC15.95■□□□□ 0.14
PKNOX1P55347 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC15.95■□□□□ 0.14
PKNOX1P55347 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
PKNOX1P55347 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC15.95■□□□□ 0.14
PKNOX1P55347 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
PKNOX1P55347 AC108751.1-201ENST00000490852 363 ntBASIC15.95■□□□□ 0.14
PKNOX1P55347 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC15.95■□□□□ 0.14
PKNOX1P55347 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC15.95■□□□□ 0.14
PKNOX1P55347 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
PKNOX1P55347 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC15.95■□□□□ 0.14
PKNOX1P55347 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC15.95■□□□□ 0.14
PKNOX1P55347 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
PKNOX1P55347 MIR4751-201ENST00000578027 74 ntBASIC15.95■□□□□ 0.14
PKNOX1P55347 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC15.95■□□□□ 0.14
PKNOX1P55347 AC148477.8-201ENST00000624298 468 ntBASIC15.95■□□□□ 0.14
PKNOX1P55347 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
PKNOX1P55347 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
PKNOX1P55347 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC15.95■□□□□ 0.14
PKNOX1P55347 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC15.95■□□□□ 0.14
PKNOX1P55347 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC15.95■□□□□ 0.14
PKNOX1P55347 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
PKNOX1P55347 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
PKNOX1P55347 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
PKNOX1P55347 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC15.95■□□□□ 0.14
PKNOX1P55347 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
PKNOX1P55347 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
PKNOX1P55347 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC15.94■□□□□ 0.14
PKNOX1P55347 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC15.94■□□□□ 0.14
PKNOX1P55347 AC018716.2-201ENST00000528390 2597 ntTSL 2 BASIC15.94■□□□□ 0.14
PKNOX1P55347 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
PKNOX1P55347 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC15.94■□□□□ 0.14
PKNOX1P55347 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC15.94■□□□□ 0.14
PKNOX1P55347 SLC25A27-201ENST00000371347 2963 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
PKNOX1P55347 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC15.94■□□□□ 0.14
PKNOX1P55347 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC15.94■□□□□ 0.14
PKNOX1P55347 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC15.94■□□□□ 0.14
PKNOX1P55347 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
PKNOX1P55347 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC15.94■□□□□ 0.14
PKNOX1P55347 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC15.94■□□□□ 0.14
PKNOX1P55347 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC15.94■□□□□ 0.14
PKNOX1P55347 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC15.94■□□□□ 0.14
PKNOX1P55347 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
PKNOX1P55347 AL513480.1-201ENST00000451731 511 ntBASIC15.94■□□□□ 0.14
PKNOX1P55347 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
PKNOX1P55347 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC15.94■□□□□ 0.14
PKNOX1P55347 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC15.94■□□□□ 0.14
PKNOX1P55347 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC15.94■□□□□ 0.14
PKNOX1P55347 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
PKNOX1P55347 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC15.94■□□□□ 0.14
PKNOX1P55347 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC15.94■□□□□ 0.14
PKNOX1P55347 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC15.94■□□□□ 0.14
PKNOX1P55347 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
PKNOX1P55347 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
PKNOX1P55347 PLEKHA8-205ENST00000449726 7835 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
PKNOX1P55347 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC15.94■□□□□ 0.14
PKNOX1P55347 EPB41L3-206ENST00000544123 3972 ntAPPRIS ALT2 TSL 2 BASIC15.94■□□□□ 0.14
PKNOX1P55347 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC15.94■□□□□ 0.14
PKNOX1P55347 C5orf30-202ENST00000510890 2933 ntAPPRIS P1 TSL 2 BASIC15.94■□□□□ 0.14
PKNOX1P55347 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC15.94■□□□□ 0.14
PKNOX1P55347 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC15.94■□□□□ 0.14
PKNOX1P55347 AP003680.1-201ENST00000598970 3660 ntBASIC15.93■□□□□ 0.14
PKNOX1P55347 TTC13-201ENST00000366661 3253 ntAPPRIS P3 TSL 1 (best) BASIC15.93■□□□□ 0.14
PKNOX1P55347 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
PKNOX1P55347 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC15.93■□□□□ 0.14
PKNOX1P55347 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
PKNOX1P55347 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC15.93■□□□□ 0.14
PKNOX1P55347 KIAA1211-201ENST00000264229 4109 ntAPPRIS P2 TSL 2 BASIC15.93■□□□□ 0.14
PKNOX1P55347 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
PKNOX1P55347 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC15.93■□□□□ 0.14
PKNOX1P55347 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC15.93■□□□□ 0.14
PKNOX1P55347 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC15.93■□□□□ 0.14
PKNOX1P55347 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
PKNOX1P55347 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
PKNOX1P55347 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
PKNOX1P55347 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
PKNOX1P55347 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC15.93■□□□□ 0.14
PKNOX1P55347 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC15.93■□□□□ 0.14
PKNOX1P55347 ACE-203ENST00000413513 2237 ntTSL 2 BASIC15.93■□□□□ 0.14
PKNOX1P55347 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
PKNOX1P55347 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
PKNOX1P55347 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 59.2 ms