Protein–RNA interactions for Protein: P55283

CDH4, Cadherin-4, humanhuman

Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH4P55283 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CDH4P55283 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
CDH4P55283 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CDH4P55283 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CDH4P55283 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC16.5■□□□□ 0.23
CDH4P55283 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CDH4P55283 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC16.5■□□□□ 0.23
CDH4P55283 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
CDH4P55283 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC16.5■□□□□ 0.23
CDH4P55283 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC16.5■□□□□ 0.23
CDH4P55283 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CDH4P55283 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
CDH4P55283 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC16.5■□□□□ 0.23
CDH4P55283 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CDH4P55283 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CDH4P55283 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CDH4P55283 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CDH4P55283 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC16.5■□□□□ 0.23
CDH4P55283 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CDH4P55283 TSSK5P-201ENST00000423978 907 ntBASIC16.5■□□□□ 0.23
CDH4P55283 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC16.5■□□□□ 0.23
CDH4P55283 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC16.5■□□□□ 0.23
CDH4P55283 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC16.5■□□□□ 0.23
CDH4P55283 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC16.5■□□□□ 0.23
CDH4P55283 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC16.5■□□□□ 0.23
CDH4P55283 INGX-202ENST00000489074 768 ntBASIC16.5■□□□□ 0.23
CDH4P55283 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CDH4P55283 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC16.5■□□□□ 0.23
CDH4P55283 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CDH4P55283 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CDH4P55283 AL096865.1-201ENST00000606796 927 ntBASIC16.5■□□□□ 0.23
CDH4P55283 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC16.5■□□□□ 0.23
CDH4P55283 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC16.5■□□□□ 0.23
CDH4P55283 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC16.5■□□□□ 0.23
CDH4P55283 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC16.5■□□□□ 0.23
CDH4P55283 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
CDH4P55283 PCDHB19P-201ENST00000570871 2371 ntBASIC16.5■□□□□ 0.23
CDH4P55283 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CDH4P55283 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CDH4P55283 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CDH4P55283 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
CDH4P55283 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC16.5■□□□□ 0.23
CDH4P55283 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC16.5■□□□□ 0.23
CDH4P55283 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CDH4P55283 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC16.5■□□□□ 0.23
CDH4P55283 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CDH4P55283 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC16.5■□□□□ 0.23
CDH4P55283 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CDH4P55283 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CDH4P55283 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
CDH4P55283 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CDH4P55283 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC16.49■□□□□ 0.23
CDH4P55283 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC16.49■□□□□ 0.23
CDH4P55283 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CDH4P55283 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CDH4P55283 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC16.49■□□□□ 0.23
CDH4P55283 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
CDH4P55283 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
CDH4P55283 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC16.49■□□□□ 0.23
CDH4P55283 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CDH4P55283 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC16.49■□□□□ 0.23
CDH4P55283 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CDH4P55283 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CDH4P55283 FO393414.2-201ENST00000405153 598 ntBASIC16.49■□□□□ 0.23
CDH4P55283 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CDH4P55283 CENPM-206ENST00000407253 818 ntTSL 2 BASIC16.49■□□□□ 0.23
CDH4P55283 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC16.49■□□□□ 0.23
CDH4P55283 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC16.49■□□□□ 0.23
CDH4P55283 EEF1DP4-201ENST00000446006 880 ntBASIC16.49■□□□□ 0.23
CDH4P55283 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC16.49■□□□□ 0.23
CDH4P55283 AC004890.2-204ENST00000481968 304 ntBASIC16.49■□□□□ 0.23
CDH4P55283 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC16.49■□□□□ 0.23
CDH4P55283 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC16.49■□□□□ 0.23
CDH4P55283 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC16.49■□□□□ 0.23
CDH4P55283 BNIP3P1-202ENST00000550043 1585 ntBASIC16.49■□□□□ 0.23
CDH4P55283 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CDH4P55283 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC16.49■□□□□ 0.23
CDH4P55283 INO80C-206ENST00000586489 594 ntTSL 3 BASIC16.49■□□□□ 0.23
CDH4P55283 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CDH4P55283 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CDH4P55283 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CDH4P55283 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC16.49■□□□□ 0.23
CDH4P55283 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CDH4P55283 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CDH4P55283 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CDH4P55283 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CDH4P55283 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CDH4P55283 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CDH4P55283 ZBTB45P2-201ENST00000452245 1531 ntBASIC16.49■□□□□ 0.23
CDH4P55283 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
CDH4P55283 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CDH4P55283 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CDH4P55283 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CDH4P55283 PCDH8P1-201ENST00000428983 2773 ntBASIC16.49■□□□□ 0.23
CDH4P55283 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
CDH4P55283 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CDH4P55283 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC16.48■□□□□ 0.23
CDH4P55283 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
CDH4P55283 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC16.48■□□□□ 0.23
CDH4P55283 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 62.8 ms