Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC15.96■□□□□ 0.15
LIMK1P53667 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
LIMK1P53667 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC15.96■□□□□ 0.15
LIMK1P53667 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
LIMK1P53667 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC15.96■□□□□ 0.15
LIMK1P53667 AC104596.2-201ENST00000512793 793 ntBASIC15.96■□□□□ 0.15
LIMK1P53667 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC15.96■□□□□ 0.15
LIMK1P53667 IFITM3-202ENST00000526811 543 ntAPPRIS ALT1 TSL 5 BASIC15.96■□□□□ 0.15
LIMK1P53667 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
LIMK1P53667 AL133523.1-201ENST00000554537 331 ntTSL 3 BASIC15.96■□□□□ 0.15
LIMK1P53667 COG4-212ENST00000564653 590 ntTSL 5 BASIC15.96■□□□□ 0.15
LIMK1P53667 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC15.96■□□□□ 0.15
LIMK1P53667 AC026979.3-201ENST00000607315 403 ntBASIC15.96■□□□□ 0.15
LIMK1P53667 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC15.96■□□□□ 0.15
LIMK1P53667 MIR6069-201ENST00000620069 79 ntBASIC15.96■□□□□ 0.15
LIMK1P53667 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC15.96■□□□□ 0.15
LIMK1P53667 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC15.96■□□□□ 0.15
LIMK1P53667 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC15.96■□□□□ 0.15
LIMK1P53667 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
LIMK1P53667 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC15.96■□□□□ 0.15
LIMK1P53667 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.15
LIMK1P53667 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC15.96■□□□□ 0.15
LIMK1P53667 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
LIMK1P53667 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
LIMK1P53667 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
LIMK1P53667 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
LIMK1P53667 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
LIMK1P53667 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
LIMK1P53667 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC15.96■□□□□ 0.15
LIMK1P53667 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.14
LIMK1P53667 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC15.96■□□□□ 0.14
LIMK1P53667 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC15.96■□□□□ 0.14
LIMK1P53667 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC15.96■□□□□ 0.14
LIMK1P53667 EGFEM1P-202ENST00000431685 1563 ntBASIC15.96■□□□□ 0.14
LIMK1P53667 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
LIMK1P53667 AC060834.1-201ENST00000443027 2032 ntBASIC15.95■□□□□ 0.14
LIMK1P53667 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
LIMK1P53667 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
LIMK1P53667 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
LIMK1P53667 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC15.95■□□□□ 0.14
LIMK1P53667 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
LIMK1P53667 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
LIMK1P53667 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
LIMK1P53667 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC15.95■□□□□ 0.14
LIMK1P53667 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
LIMK1P53667 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC15.95■□□□□ 0.14
LIMK1P53667 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
LIMK1P53667 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC15.95■□□□□ 0.14
LIMK1P53667 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
LIMK1P53667 AC099336.1-201ENST00000417053 1171 ntBASIC15.95■□□□□ 0.14
LIMK1P53667 AL589987.1-201ENST00000453380 819 ntBASIC15.95■□□□□ 0.14
LIMK1P53667 AC108725.1-201ENST00000495472 409 ntBASIC15.95■□□□□ 0.14
LIMK1P53667 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC15.95■□□□□ 0.14
LIMK1P53667 PLEKHB1-206ENST00000535129 1049 ntAPPRIS ALT1 TSL 2 BASIC15.95■□□□□ 0.14
LIMK1P53667 AC129510.1-201ENST00000579979 555 ntTSL 3 BASIC15.95■□□□□ 0.14
LIMK1P53667 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC15.95■□□□□ 0.14
LIMK1P53667 FHL2-212ENST00000607522 759 ntTSL 2 BASIC15.95■□□□□ 0.14
LIMK1P53667 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC15.95■□□□□ 0.14
LIMK1P53667 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC15.95■□□□□ 0.14
LIMK1P53667 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
LIMK1P53667 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
LIMK1P53667 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
LIMK1P53667 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
LIMK1P53667 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC15.95■□□□□ 0.14
LIMK1P53667 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
LIMK1P53667 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC15.95■□□□□ 0.14
LIMK1P53667 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
LIMK1P53667 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
LIMK1P53667 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC15.95■□□□□ 0.14
LIMK1P53667 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
LIMK1P53667 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC15.94■□□□□ 0.14
LIMK1P53667 AC008894.3-201ENST00000624324 3103 ntBASIC15.94■□□□□ 0.14
LIMK1P53667 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC15.94■□□□□ 0.14
LIMK1P53667 DEK-201ENST00000244776 1441 ntTSL 2 BASIC15.94■□□□□ 0.14
LIMK1P53667 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
LIMK1P53667 PMPCB-201ENST00000249269 2472 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
LIMK1P53667 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC15.94■□□□□ 0.14
LIMK1P53667 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC15.94■□□□□ 0.14
LIMK1P53667 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC15.94■□□□□ 0.14
LIMK1P53667 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
LIMK1P53667 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC15.94■□□□□ 0.14
LIMK1P53667 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC15.94■□□□□ 0.14
LIMK1P53667 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
LIMK1P53667 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
LIMK1P53667 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
LIMK1P53667 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC15.94■□□□□ 0.14
LIMK1P53667 GEMIN4-202ENST00000437269 1182 ntTSL 2 BASIC15.94■□□□□ 0.14
LIMK1P53667 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
LIMK1P53667 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC15.94■□□□□ 0.14
LIMK1P53667 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC15.94■□□□□ 0.14
LIMK1P53667 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC15.94■□□□□ 0.14
LIMK1P53667 AC244517.4-201ENST00000624549 580 ntTSL 4 BASIC15.94■□□□□ 0.14
LIMK1P53667 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC15.94■□□□□ 0.14
LIMK1P53667 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
LIMK1P53667 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
LIMK1P53667 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
LIMK1P53667 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC15.94■□□□□ 0.14
LIMK1P53667 BANP-204ENST00000393208 2283 ntTSL 2 BASIC15.94■□□□□ 0.14
LIMK1P53667 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
LIMK1P53667 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC15.94■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms