Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
CXCL12P48061 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CXCL12P48061 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CXCL12P48061 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
CXCL12P48061 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
CXCL12P48061 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CXCL12P48061 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC15.96■□□□□ 0.15
CXCL12P48061 ACE-204ENST00000428043 5120 ntTSL 2 BASIC15.96■□□□□ 0.15
CXCL12P48061 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CXCL12P48061 LETM1P2-201ENST00000597330 2178 ntBASIC15.96■□□□□ 0.15
CXCL12P48061 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC15.96■□□□□ 0.15
CXCL12P48061 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC15.96■□□□□ 0.15
CXCL12P48061 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
CXCL12P48061 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC15.96■□□□□ 0.15
CXCL12P48061 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CXCL12P48061 C1orf123-201ENST00000294360 1085 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CXCL12P48061 KLK1-201ENST00000301420 866 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CXCL12P48061 C3orf22-201ENST00000318225 1000 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CXCL12P48061 FCGR1B-203ENST00000369384 1044 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
CXCL12P48061 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC15.96■□□□□ 0.15
CXCL12P48061 ELK2AP-201ENST00000392510 1007 ntBASIC15.96■□□□□ 0.15
CXCL12P48061 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
CXCL12P48061 ZNF527-203ENST00000483919 1142 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
CXCL12P48061 AC104596.1-201ENST00000507826 579 ntTSL 4 BASIC15.96■□□□□ 0.15
CXCL12P48061 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC15.96■□□□□ 0.15
CXCL12P48061 LINC02205-201ENST00000559752 239 ntTSL 5 BASIC15.96■□□□□ 0.15
CXCL12P48061 DBNDD1-206ENST00000568838 993 ntTSL 2 BASIC15.96■□□□□ 0.15
CXCL12P48061 AL121944.1-201ENST00000605945 686 ntTSL 2 BASIC15.96■□□□□ 0.15
CXCL12P48061 LINC00623-205ENST00000621058 767 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
CXCL12P48061 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC15.96■□□□□ 0.15
CXCL12P48061 AC008687.7-202ENST00000637404 953 ntBASIC15.96■□□□□ 0.15
CXCL12P48061 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CXCL12P48061 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CXCL12P48061 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC15.96■□□□□ 0.15
CXCL12P48061 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC15.96■□□□□ 0.14
CXCL12P48061 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC15.96■□□□□ 0.14
CXCL12P48061 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
CXCL12P48061 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC15.96■□□□□ 0.14
CXCL12P48061 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.14
CXCL12P48061 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.14
CXCL12P48061 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC15.96■□□□□ 0.14
CXCL12P48061 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC15.96■□□□□ 0.14
CXCL12P48061 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC15.96■□□□□ 0.14
CXCL12P48061 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC15.95■□□□□ 0.14
CXCL12P48061 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
CXCL12P48061 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC15.95■□□□□ 0.14
CXCL12P48061 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC15.95■□□□□ 0.14
CXCL12P48061 SIGLEC12-203ENST00000598614 1434 ntTSL 5 BASIC15.95■□□□□ 0.14
CXCL12P48061 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC15.95■□□□□ 0.14
CXCL12P48061 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
CXCL12P48061 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
CXCL12P48061 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC15.95■□□□□ 0.14
CXCL12P48061 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
CXCL12P48061 MASP2-202ENST00000400898 726 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
CXCL12P48061 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC15.95■□□□□ 0.14
CXCL12P48061 DRGX-202ENST00000434016 955 ntAPPRIS P1 TSL 5 BASIC15.95■□□□□ 0.14
CXCL12P48061 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC15.95■□□□□ 0.14
CXCL12P48061 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC15.95■□□□□ 0.14
CXCL12P48061 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC15.95■□□□□ 0.14
CXCL12P48061 ZNF767P-206ENST00000513792 565 ntBASIC15.95■□□□□ 0.14
CXCL12P48061 RPL8-205ENST00000527914 551 ntTSL 3 BASIC15.95■□□□□ 0.14
CXCL12P48061 SNHG9-201ENST00000531523 275 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
CXCL12P48061 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
CXCL12P48061 KRT90P-201ENST00000549264 1064 ntBASIC15.95■□□□□ 0.14
CXCL12P48061 AC023310.1-201ENST00000554836 735 ntBASIC15.95■□□□□ 0.14
CXCL12P48061 AC026495.1-203ENST00000557528 906 ntTSL 5 BASIC15.95■□□□□ 0.14
CXCL12P48061 C2orf69P2-201ENST00000562032 1123 ntBASIC15.95■□□□□ 0.14
CXCL12P48061 CRISPLD2-210ENST00000569090 808 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
CXCL12P48061 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
CXCL12P48061 TNNT1-212ENST00000588981 1163 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
CXCL12P48061 PLA2G4C-AS1-201ENST00000596552 568 ntTSL 3 BASIC15.95■□□□□ 0.14
CXCL12P48061 ZNF347-208ENST00000601804 496 ntTSL 4 BASIC15.95■□□□□ 0.14
CXCL12P48061 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC15.95■□□□□ 0.14
CXCL12P48061 AL022328.3-201ENST00000607943 679 ntBASIC15.95■□□□□ 0.14
CXCL12P48061 PPA1-206ENST00000625364 644 ntTSL 5 BASIC15.95■□□□□ 0.14
CXCL12P48061 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC15.95■□□□□ 0.14
CXCL12P48061 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC15.95■□□□□ 0.14
CXCL12P48061 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC15.95■□□□□ 0.14
CXCL12P48061 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC15.95■□□□□ 0.14
CXCL12P48061 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
CXCL12P48061 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
CXCL12P48061 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
CXCL12P48061 RGS6-218ENST00000556437 1689 ntAPPRIS ALT1 TSL 1 (best) BASIC15.95■□□□□ 0.14
CXCL12P48061 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC15.95■□□□□ 0.14
CXCL12P48061 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
CXCL12P48061 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
CXCL12P48061 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC15.95■□□□□ 0.14
CXCL12P48061 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC15.95■□□□□ 0.14
CXCL12P48061 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC15.94■□□□□ 0.14
CXCL12P48061 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
CXCL12P48061 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
CXCL12P48061 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
CXCL12P48061 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC15.94■□□□□ 0.14
CXCL12P48061 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
CXCL12P48061 EIF4EBP3-201ENST00000310331 691 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
CXCL12P48061 CFLAR-203ENST00000341222 1283 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
CXCL12P48061 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
CXCL12P48061 TPO-206ENST00000382269 1155 ntTSL 5 BASIC15.94■□□□□ 0.14
CXCL12P48061 VAMP1-203ENST00000400911 1068 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
CXCL12P48061 LINC01665-201ENST00000422917 1241 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 45.2 ms