Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
RFC3P40938 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
RFC3P40938 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC14.87□□□□□ -0.03
RFC3P40938 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC14.87□□□□□ -0.03
RFC3P40938 TERF1P3-201ENST00000505638 1227 ntBASIC14.87□□□□□ -0.03
RFC3P40938 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC14.87□□□□□ -0.03
RFC3P40938 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
RFC3P40938 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC14.87□□□□□ -0.03
RFC3P40938 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC14.87□□□□□ -0.03
RFC3P40938 AC105021.1-202ENST00000570572 669 ntBASIC14.87□□□□□ -0.03
RFC3P40938 FHL2-212ENST00000607522 759 ntTSL 2 BASIC14.87□□□□□ -0.03
RFC3P40938 AL589739.1-201ENST00000607720 493 ntBASIC14.87□□□□□ -0.03
RFC3P40938 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
RFC3P40938 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
RFC3P40938 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC14.87□□□□□ -0.03
RFC3P40938 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
RFC3P40938 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC14.87□□□□□ -0.03
RFC3P40938 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
RFC3P40938 AC005052.1-201ENST00000625181 2492 ntBASIC14.87□□□□□ -0.03
RFC3P40938 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
RFC3P40938 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC14.87□□□□□ -0.03
RFC3P40938 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC14.87□□□□□ -0.03
RFC3P40938 GRAMD4P3-201ENST00000621665 1669 ntBASIC14.87□□□□□ -0.03
RFC3P40938 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
RFC3P40938 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC14.86□□□□□ -0.03
RFC3P40938 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
RFC3P40938 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
RFC3P40938 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
RFC3P40938 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
RFC3P40938 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC14.86□□□□□ -0.03
RFC3P40938 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC14.86□□□□□ -0.03
RFC3P40938 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
RFC3P40938 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
RFC3P40938 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC14.86□□□□□ -0.03
RFC3P40938 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
RFC3P40938 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
RFC3P40938 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC14.86□□□□□ -0.03
RFC3P40938 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
RFC3P40938 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC14.86□□□□□ -0.03
RFC3P40938 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
RFC3P40938 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC14.86□□□□□ -0.03
RFC3P40938 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
RFC3P40938 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
RFC3P40938 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
RFC3P40938 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
RFC3P40938 VMO1-203ENST00000416307 712 ntTSL 2 BASIC14.86□□□□□ -0.03
RFC3P40938 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC14.86□□□□□ -0.03
RFC3P40938 AC004890.2-204ENST00000481968 304 ntBASIC14.86□□□□□ -0.03
RFC3P40938 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC14.86□□□□□ -0.03
RFC3P40938 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC14.86□□□□□ -0.03
RFC3P40938 BANF1P1-201ENST00000553684 263 ntBASIC14.86□□□□□ -0.03
RFC3P40938 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC14.86□□□□□ -0.03
RFC3P40938 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC14.86□□□□□ -0.03
RFC3P40938 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC14.86□□□□□ -0.03
RFC3P40938 RN7SL828P-201ENST00000607615 303 ntBASIC14.86□□□□□ -0.03
RFC3P40938 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
RFC3P40938 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
RFC3P40938 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
RFC3P40938 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
RFC3P40938 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
RFC3P40938 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC14.86□□□□□ -0.03
RFC3P40938 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
RFC3P40938 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
RFC3P40938 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC14.86□□□□□ -0.03
RFC3P40938 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC14.86□□□□□ -0.03
RFC3P40938 HLA-A-202ENST00000376806 1854 ntBASIC14.86□□□□□ -0.03
RFC3P40938 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC14.86□□□□□ -0.03
RFC3P40938 PCGF3-213ENST00000620529 1899 ntBASIC14.86□□□□□ -0.03
RFC3P40938 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
RFC3P40938 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC14.86□□□□□ -0.03
RFC3P40938 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC14.86□□□□□ -0.03
RFC3P40938 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
RFC3P40938 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
RFC3P40938 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC14.86□□□□□ -0.03
RFC3P40938 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC14.86□□□□□ -0.03
RFC3P40938 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC14.86□□□□□ -0.03
RFC3P40938 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC14.86□□□□□ -0.03
RFC3P40938 EPB41L3-202ENST00000342933 4270 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
RFC3P40938 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
RFC3P40938 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
RFC3P40938 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
RFC3P40938 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC14.85□□□□□ -0.03
RFC3P40938 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
RFC3P40938 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
RFC3P40938 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC14.85□□□□□ -0.03
RFC3P40938 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
RFC3P40938 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
RFC3P40938 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
RFC3P40938 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
RFC3P40938 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC14.85□□□□□ -0.03
RFC3P40938 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
RFC3P40938 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
RFC3P40938 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC14.85□□□□□ -0.03
RFC3P40938 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
RFC3P40938 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
RFC3P40938 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
RFC3P40938 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
RFC3P40938 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
RFC3P40938 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
RFC3P40938 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC14.85□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 39.1 ms