Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
COL9A1P20849 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
COL9A1P20849 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
COL9A1P20849 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC16.52■□□□□ 0.24
COL9A1P20849 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
COL9A1P20849 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
COL9A1P20849 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
COL9A1P20849 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.23
COL9A1P20849 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
COL9A1P20849 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.23
COL9A1P20849 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.23
COL9A1P20849 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC16.52■□□□□ 0.23
COL9A1P20849 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC16.52■□□□□ 0.23
COL9A1P20849 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC16.52■□□□□ 0.23
COL9A1P20849 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
COL9A1P20849 CRCP-201ENST00000338592 1393 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
COL9A1P20849 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC16.51■□□□□ 0.23
COL9A1P20849 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
COL9A1P20849 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC16.51■□□□□ 0.23
COL9A1P20849 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
COL9A1P20849 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
COL9A1P20849 BANP-227ENST00000626016 2144 ntTSL 2 BASIC16.51■□□□□ 0.23
COL9A1P20849 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
COL9A1P20849 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
COL9A1P20849 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
COL9A1P20849 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC16.51■□□□□ 0.23
COL9A1P20849 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
COL9A1P20849 IFNA1-201ENST00000276927 863 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
COL9A1P20849 HBB-201ENST00000335295 628 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
COL9A1P20849 IL27-201ENST00000356897 1044 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
COL9A1P20849 TMEM242-201ENST00000367144 1030 ntTSL 2 BASIC16.51■□□□□ 0.23
COL9A1P20849 AZGP1P1-201ENST00000411909 902 ntBASIC16.51■□□□□ 0.23
COL9A1P20849 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC16.51■□□□□ 0.23
COL9A1P20849 SEPT7P2-209ENST00000450436 601 ntTSL 4 BASIC16.51■□□□□ 0.23
COL9A1P20849 PGAP2-214ENST00000465307 1100 ntTSL 2 BASIC16.51■□□□□ 0.23
COL9A1P20849 AC105389.3-201ENST00000508038 907 ntTSL 5 BASIC16.51■□□□□ 0.23
COL9A1P20849 HYAL3-206ENST00000513170 636 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
COL9A1P20849 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC16.51■□□□□ 0.23
COL9A1P20849 AC068587.3-201ENST00000526613 355 ntBASIC16.51■□□□□ 0.23
COL9A1P20849 EMC4-208ENST00000559078 599 ntTSL 3 BASIC16.51■□□□□ 0.23
COL9A1P20849 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC16.51■□□□□ 0.23
COL9A1P20849 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
COL9A1P20849 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC16.51■□□□□ 0.23
COL9A1P20849 AC100778.2-201ENST00000580150 483 ntTSL 5 BASIC16.51■□□□□ 0.23
COL9A1P20849 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC16.51■□□□□ 0.23
COL9A1P20849 AC133539.2-201ENST00000604757 467 ntBASIC16.51■□□□□ 0.23
COL9A1P20849 COPS9-205ENST00000607357 418 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
COL9A1P20849 AL137026.1-201ENST00000624407 503 ntTSL 4 BASIC16.51■□□□□ 0.23
COL9A1P20849 LINC00969-257ENST00000625632 898 ntTSL 5 BASIC16.51■□□□□ 0.23
COL9A1P20849 PLEKHB2-211ENST00000628582 1297 ntTSL 2 BASIC16.51■□□□□ 0.23
COL9A1P20849 AL033527.5-202ENST00000641632 1098 ntBASIC16.51■□□□□ 0.23
COL9A1P20849 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC16.51■□□□□ 0.23
COL9A1P20849 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
COL9A1P20849 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
COL9A1P20849 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
COL9A1P20849 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
COL9A1P20849 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
COL9A1P20849 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
COL9A1P20849 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
COL9A1P20849 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
COL9A1P20849 CYP51A1P3-201ENST00000400072 1428 ntBASIC16.51■□□□□ 0.23
COL9A1P20849 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
COL9A1P20849 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
COL9A1P20849 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
COL9A1P20849 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
COL9A1P20849 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC16.51■□□□□ 0.23
COL9A1P20849 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC16.51■□□□□ 0.23
COL9A1P20849 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
COL9A1P20849 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC16.5■□□□□ 0.23
COL9A1P20849 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL9A1P20849 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
COL9A1P20849 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL9A1P20849 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL9A1P20849 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
COL9A1P20849 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL9A1P20849 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
COL9A1P20849 FZD10-202ENST00000539839 3282 ntBASIC16.5■□□□□ 0.23
COL9A1P20849 AC139713.2-201ENST00000641328 2723 ntBASIC16.5■□□□□ 0.23
COL9A1P20849 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
COL9A1P20849 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
COL9A1P20849 THOC6-201ENST00000253952 1246 ntTSL 2 BASIC16.5■□□□□ 0.23
COL9A1P20849 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
COL9A1P20849 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC16.5■□□□□ 0.23
COL9A1P20849 TREM2-203ENST00000373122 1012 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL9A1P20849 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL9A1P20849 MAPK15-203ENST00000395108 765 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
COL9A1P20849 HNRNPA1P32-201ENST00000396326 963 ntBASIC16.5■□□□□ 0.23
COL9A1P20849 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC16.5■□□□□ 0.23
COL9A1P20849 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL9A1P20849 AC010234.1-201ENST00000494599 870 ntBASIC16.5■□□□□ 0.23
COL9A1P20849 ORAOV1-209ENST00000538554 1000 ntTSL 2 BASIC16.5■□□□□ 0.23
COL9A1P20849 ZNF790-AS1-203ENST00000588906 850 ntTSL 2 BASIC16.5■□□□□ 0.23
COL9A1P20849 CLEC11A-202ENST00000599973 1026 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
COL9A1P20849 STXBP2-221ENST00000602355 716 ntTSL 2 BASIC16.5■□□□□ 0.23
COL9A1P20849 AC092723.2-201ENST00000624955 793 ntBASIC16.5■□□□□ 0.23
COL9A1P20849 AL139011.1-202ENST00000642063 584 ntBASIC16.5■□□□□ 0.23
COL9A1P20849 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL9A1P20849 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
COL9A1P20849 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
COL9A1P20849 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC16.5■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 52.8 ms