Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
PTCHD3Q3KNS1 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
PTCHD3Q3KNS1 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
PTCHD3Q3KNS1 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC23.06■■□□□ 1.28
PTCHD3Q3KNS1 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
PTCHD3Q3KNS1 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
PTCHD3Q3KNS1 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
PTCHD3Q3KNS1 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
PTCHD3Q3KNS1 KRT18P10-201ENST00000388836 1287 ntBASIC23.05■■□□□ 1.28
PTCHD3Q3KNS1 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
PTCHD3Q3KNS1 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC23.05■■□□□ 1.28
PTCHD3Q3KNS1 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC23.04■■□□□ 1.28
PTCHD3Q3KNS1 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC23.04■■□□□ 1.28
PTCHD3Q3KNS1 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC23.04■■□□□ 1.28
PTCHD3Q3KNS1 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
PTCHD3Q3KNS1 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
PTCHD3Q3KNS1 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
PTCHD3Q3KNS1 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
PTCHD3Q3KNS1 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC23.04■■□□□ 1.28
PTCHD3Q3KNS1 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
PTCHD3Q3KNS1 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
PTCHD3Q3KNS1 AC138932.3-201ENST00000567634 1902 ntBASIC23.04■■□□□ 1.28
PTCHD3Q3KNS1 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
PTCHD3Q3KNS1 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC23.03■■□□□ 1.28
PTCHD3Q3KNS1 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC23.02■■□□□ 1.28
PTCHD3Q3KNS1 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC23.02■■□□□ 1.28
PTCHD3Q3KNS1 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
PTCHD3Q3KNS1 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
PTCHD3Q3KNS1 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC23.02■■□□□ 1.28
PTCHD3Q3KNS1 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
PTCHD3Q3KNS1 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC23.01■■□□□ 1.27
PTCHD3Q3KNS1 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
PTCHD3Q3KNS1 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
PTCHD3Q3KNS1 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC23.01■■□□□ 1.27
PTCHD3Q3KNS1 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC23.01■■□□□ 1.27
PTCHD3Q3KNS1 KRT8P33-201ENST00000508125 1423 ntBASIC23.01■■□□□ 1.27
PTCHD3Q3KNS1 HYI-210ENST00000486909 905 ntTSL 5 BASIC23.01■■□□□ 1.27
PTCHD3Q3KNS1 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC23.01■■□□□ 1.27
PTCHD3Q3KNS1 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC23.01■■□□□ 1.27
PTCHD3Q3KNS1 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
PTCHD3Q3KNS1 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC23.01■■□□□ 1.27
PTCHD3Q3KNS1 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
PTCHD3Q3KNS1 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC23.01■■□□□ 1.27
PTCHD3Q3KNS1 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
PTCHD3Q3KNS1 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC23■■□□□ 1.27
PTCHD3Q3KNS1 BEX3-202ENST00000372634 753 ntTSL 2 BASIC23■■□□□ 1.27
PTCHD3Q3KNS1 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC23■■□□□ 1.27
PTCHD3Q3KNS1 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC23■■□□□ 1.27
PTCHD3Q3KNS1 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC23■■□□□ 1.27
PTCHD3Q3KNS1 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
PTCHD3Q3KNS1 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
PTCHD3Q3KNS1 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC22.99■■□□□ 1.27
PTCHD3Q3KNS1 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
PTCHD3Q3KNS1 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC22.99■■□□□ 1.27
PTCHD3Q3KNS1 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
PTCHD3Q3KNS1 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
PTCHD3Q3KNS1 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
PTCHD3Q3KNS1 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
PTCHD3Q3KNS1 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
PTCHD3Q3KNS1 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
PTCHD3Q3KNS1 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
PTCHD3Q3KNS1 IDNK-203ENST00000405990 629 ntTSL 2 BASIC22.98■■□□□ 1.27
PTCHD3Q3KNS1 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC22.98■■□□□ 1.27
PTCHD3Q3KNS1 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC22.98■■□□□ 1.27
PTCHD3Q3KNS1 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC22.98■■□□□ 1.27
PTCHD3Q3KNS1 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC22.98■■□□□ 1.27
PTCHD3Q3KNS1 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC22.97■■□□□ 1.27
PTCHD3Q3KNS1 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
PTCHD3Q3KNS1 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
PTCHD3Q3KNS1 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC22.97■■□□□ 1.27
PTCHD3Q3KNS1 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC22.97■■□□□ 1.27
PTCHD3Q3KNS1 AC074183.2-201ENST00000623112 922 ntBASIC22.97■■□□□ 1.27
PTCHD3Q3KNS1 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
PTCHD3Q3KNS1 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC22.96■■□□□ 1.27
PTCHD3Q3KNS1 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
PTCHD3Q3KNS1 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
PTCHD3Q3KNS1 PVT1_1.1-201ENST00000615125 194 ntBASIC22.96■■□□□ 1.27
PTCHD3Q3KNS1 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
PTCHD3Q3KNS1 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
PTCHD3Q3KNS1 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC22.96■■□□□ 1.27
PTCHD3Q3KNS1 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
PTCHD3Q3KNS1 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
PTCHD3Q3KNS1 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC22.96■■□□□ 1.27
PTCHD3Q3KNS1 RPS2P7-201ENST00000447334 885 ntBASIC22.95■■□□□ 1.26
PTCHD3Q3KNS1 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC22.95■■□□□ 1.26
PTCHD3Q3KNS1 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
PTCHD3Q3KNS1 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC22.95■■□□□ 1.26
PTCHD3Q3KNS1 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
PTCHD3Q3KNS1 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC22.94■■□□□ 1.26
PTCHD3Q3KNS1 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
PTCHD3Q3KNS1 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC22.94■■□□□ 1.26
PTCHD3Q3KNS1 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC22.94■■□□□ 1.26
PTCHD3Q3KNS1 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC22.94■■□□□ 1.26
PTCHD3Q3KNS1 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC22.94■■□□□ 1.26
PTCHD3Q3KNS1 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC22.94■■□□□ 1.26
PTCHD3Q3KNS1 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC22.94■■□□□ 1.26
PTCHD3Q3KNS1 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
PTCHD3Q3KNS1 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC22.94■■□□□ 1.26
PTCHD3Q3KNS1 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC22.93■■□□□ 1.26
PTCHD3Q3KNS1 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC22.93■■□□□ 1.26
Retrieved 100 of 98,524 protein–RNA pairs in 15.1 ms