Protein–RNA interactions for Protein: Q33E94

RFX4, Transcription factor RFX4, humanhuman

Predictions only

Length 735 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX4Q33E94 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC21.87■■□□□ 1.09
RFX4Q33E94 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
RFX4Q33E94 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
RFX4Q33E94 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
RFX4Q33E94 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC21.86■■□□□ 1.09
RFX4Q33E94 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
RFX4Q33E94 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC21.85■■□□□ 1.09
RFX4Q33E94 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC21.85■■□□□ 1.09
RFX4Q33E94 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC21.85■■□□□ 1.09
RFX4Q33E94 RNF166-209ENST00000567844 633 ntTSL 5 BASIC21.85■■□□□ 1.09
RFX4Q33E94 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC21.85■■□□□ 1.09
RFX4Q33E94 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC21.85■■□□□ 1.09
RFX4Q33E94 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
RFX4Q33E94 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC21.85■■□□□ 1.09
RFX4Q33E94 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC21.85■■□□□ 1.09
RFX4Q33E94 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
RFX4Q33E94 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
RFX4Q33E94 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
RFX4Q33E94 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC21.84■■□□□ 1.09
RFX4Q33E94 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
RFX4Q33E94 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC21.84■■□□□ 1.09
RFX4Q33E94 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
RFX4Q33E94 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC21.84■■□□□ 1.09
RFX4Q33E94 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC21.84■■□□□ 1.09
RFX4Q33E94 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
RFX4Q33E94 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
RFX4Q33E94 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
RFX4Q33E94 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC21.83■■□□□ 1.09
RFX4Q33E94 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC21.83■■□□□ 1.09
RFX4Q33E94 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC21.83■■□□□ 1.09
RFX4Q33E94 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
RFX4Q33E94 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC21.83■■□□□ 1.08
RFX4Q33E94 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC21.83■■□□□ 1.08
RFX4Q33E94 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
RFX4Q33E94 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC21.82■■□□□ 1.08
RFX4Q33E94 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
RFX4Q33E94 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC21.82■■□□□ 1.08
RFX4Q33E94 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC21.82■■□□□ 1.08
RFX4Q33E94 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC21.82■■□□□ 1.08
RFX4Q33E94 MED25-210ENST00000612854 801 ntTSL 5 BASIC21.82■■□□□ 1.08
RFX4Q33E94 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
RFX4Q33E94 MED25-214ENST00000622402 642 ntTSL 5 BASIC21.82■■□□□ 1.08
RFX4Q33E94 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
RFX4Q33E94 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
RFX4Q33E94 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
RFX4Q33E94 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
RFX4Q33E94 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC21.81■■□□□ 1.08
RFX4Q33E94 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
RFX4Q33E94 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC21.81■■□□□ 1.08
RFX4Q33E94 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC21.81■■□□□ 1.08
RFX4Q33E94 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
RFX4Q33E94 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
RFX4Q33E94 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
RFX4Q33E94 CR559946.2-201ENST00000623684 991 ntBASIC21.8■■□□□ 1.08
RFX4Q33E94 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
RFX4Q33E94 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC21.8■■□□□ 1.08
RFX4Q33E94 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC21.79■■□□□ 1.08
RFX4Q33E94 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
RFX4Q33E94 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC21.79■■□□□ 1.08
RFX4Q33E94 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
RFX4Q33E94 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC21.79■■□□□ 1.08
RFX4Q33E94 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC21.79■■□□□ 1.08
RFX4Q33E94 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC21.79■■□□□ 1.08
RFX4Q33E94 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
RFX4Q33E94 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC21.78■■□□□ 1.08
RFX4Q33E94 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC21.78■■□□□ 1.08
RFX4Q33E94 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
RFX4Q33E94 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
RFX4Q33E94 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
RFX4Q33E94 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
RFX4Q33E94 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC21.78■■□□□ 1.08
RFX4Q33E94 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC21.78■■□□□ 1.08
RFX4Q33E94 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC21.77■■□□□ 1.08
RFX4Q33E94 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
RFX4Q33E94 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
RFX4Q33E94 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
RFX4Q33E94 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC21.77■■□□□ 1.08
RFX4Q33E94 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC21.77■■□□□ 1.08
RFX4Q33E94 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
RFX4Q33E94 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.08
RFX4Q33E94 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
RFX4Q33E94 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC21.76■■□□□ 1.07
RFX4Q33E94 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
RFX4Q33E94 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC21.76■■□□□ 1.07
RFX4Q33E94 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
RFX4Q33E94 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
RFX4Q33E94 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC21.76■■□□□ 1.07
RFX4Q33E94 AC126177.7-201ENST00000547904 679 ntBASIC21.76■■□□□ 1.07
RFX4Q33E94 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
RFX4Q33E94 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC21.76■■□□□ 1.07
RFX4Q33E94 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
RFX4Q33E94 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC21.75■■□□□ 1.07
RFX4Q33E94 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC21.75■■□□□ 1.07
RFX4Q33E94 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
RFX4Q33E94 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
RFX4Q33E94 ABHD17AP4-201ENST00000411545 909 ntBASIC21.75■■□□□ 1.07
RFX4Q33E94 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC21.75■■□□□ 1.07
RFX4Q33E94 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
RFX4Q33E94 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC21.75■■□□□ 1.07
RFX4Q33E94 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC21.75■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 11.7 ms