Protein–RNA interactions for Protein: Q9NTJ3

SMC4, Structural maintenance of chromosomes protein 4, humanhuman

Predictions only

Length 1,288 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4Q9NTJ3 CNN2P11-201ENST00000429351 262 ntBASIC20.81■□□□□ 0.92
SMC4Q9NTJ3 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC20.81■□□□□ 0.92
SMC4Q9NTJ3 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC20.81■□□□□ 0.92
SMC4Q9NTJ3 AC024267.1-201ENST00000582320 895 ntBASIC20.81■□□□□ 0.92
SMC4Q9NTJ3 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC20.81■□□□□ 0.92
SMC4Q9NTJ3 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC20.81■□□□□ 0.92
SMC4Q9NTJ3 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC20.81■□□□□ 0.92
SMC4Q9NTJ3 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SMC4Q9NTJ3 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SMC4Q9NTJ3 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SMC4Q9NTJ3 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC20.81■□□□□ 0.92
SMC4Q9NTJ3 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SMC4Q9NTJ3 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC20.81■□□□□ 0.92
SMC4Q9NTJ3 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC20.81■□□□□ 0.92
SMC4Q9NTJ3 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SMC4Q9NTJ3 AC008677.1-201ENST00000519230 1561 ntBASIC20.8■□□□□ 0.92
SMC4Q9NTJ3 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
SMC4Q9NTJ3 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
SMC4Q9NTJ3 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC20.8■□□□□ 0.92
SMC4Q9NTJ3 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SMC4Q9NTJ3 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SMC4Q9NTJ3 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SMC4Q9NTJ3 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SMC4Q9NTJ3 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
SMC4Q9NTJ3 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
SMC4Q9NTJ3 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
SMC4Q9NTJ3 RPS8P6-201ENST00000426177 609 ntBASIC20.8■□□□□ 0.92
SMC4Q9NTJ3 GPS2P2-201ENST00000430745 888 ntBASIC20.8■□□□□ 0.92
SMC4Q9NTJ3 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC20.8■□□□□ 0.92
SMC4Q9NTJ3 DNAJB3-202ENST00000449667 1266 ntBASIC20.8■□□□□ 0.92
SMC4Q9NTJ3 RARRES2P9-201ENST00000565168 469 ntBASIC20.8■□□□□ 0.92
SMC4Q9NTJ3 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC20.8■□□□□ 0.92
SMC4Q9NTJ3 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC20.8■□□□□ 0.92
SMC4Q9NTJ3 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC20.8■□□□□ 0.92
SMC4Q9NTJ3 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SMC4Q9NTJ3 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC20.8■□□□□ 0.92
SMC4Q9NTJ3 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC20.8■□□□□ 0.92
SMC4Q9NTJ3 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
SMC4Q9NTJ3 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
SMC4Q9NTJ3 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC20.8■□□□□ 0.92
SMC4Q9NTJ3 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC20.8■□□□□ 0.92
SMC4Q9NTJ3 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC20.8■□□□□ 0.92
SMC4Q9NTJ3 AC027612.4-201ENST00000605371 583 ntBASIC20.8■□□□□ 0.92
SMC4Q9NTJ3 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
SMC4Q9NTJ3 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SMC4Q9NTJ3 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
SMC4Q9NTJ3 F11R-206ENST00000621309 4770 ntTSL 5 BASIC20.8■□□□□ 0.92
SMC4Q9NTJ3 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
SMC4Q9NTJ3 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SMC4Q9NTJ3 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC20.8■□□□□ 0.92
SMC4Q9NTJ3 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC20.8■□□□□ 0.92
SMC4Q9NTJ3 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SMC4Q9NTJ3 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC20.8■□□□□ 0.92
SMC4Q9NTJ3 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC20.8■□□□□ 0.92
SMC4Q9NTJ3 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC20.8■□□□□ 0.92
SMC4Q9NTJ3 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
SMC4Q9NTJ3 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SMC4Q9NTJ3 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
SMC4Q9NTJ3 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SMC4Q9NTJ3 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SMC4Q9NTJ3 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
SMC4Q9NTJ3 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
SMC4Q9NTJ3 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SMC4Q9NTJ3 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SMC4Q9NTJ3 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
SMC4Q9NTJ3 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
SMC4Q9NTJ3 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SMC4Q9NTJ3 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC20.79■□□□□ 0.92
SMC4Q9NTJ3 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC20.79■□□□□ 0.92
SMC4Q9NTJ3 CD81-202ENST00000381036 880 ntTSL 3 BASIC20.79■□□□□ 0.92
SMC4Q9NTJ3 AC023141.5-201ENST00000458585 616 ntBASIC20.79■□□□□ 0.92
SMC4Q9NTJ3 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC20.79■□□□□ 0.92
SMC4Q9NTJ3 ALG1L8P-201ENST00000533887 760 ntBASIC20.79■□□□□ 0.92
SMC4Q9NTJ3 SNHG9-202ENST00000564014 471 ntBASIC20.79■□□□□ 0.92
SMC4Q9NTJ3 AL691403.2-201ENST00000618460 490 ntBASIC20.79■□□□□ 0.92
SMC4Q9NTJ3 AC009093.7-201ENST00000623853 1223 ntBASIC20.79■□□□□ 0.92
SMC4Q9NTJ3 GOLGA6L17P-202ENST00000614358 1398 ntBASIC20.79■□□□□ 0.92
SMC4Q9NTJ3 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SMC4Q9NTJ3 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC20.79■□□□□ 0.92
SMC4Q9NTJ3 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SMC4Q9NTJ3 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SMC4Q9NTJ3 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
SMC4Q9NTJ3 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SMC4Q9NTJ3 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC20.79■□□□□ 0.92
SMC4Q9NTJ3 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SMC4Q9NTJ3 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC20.79■□□□□ 0.92
SMC4Q9NTJ3 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC20.79■□□□□ 0.92
SMC4Q9NTJ3 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SMC4Q9NTJ3 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SMC4Q9NTJ3 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
SMC4Q9NTJ3 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
SMC4Q9NTJ3 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SMC4Q9NTJ3 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SMC4Q9NTJ3 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
SMC4Q9NTJ3 AC112504.1-201ENST00000623415 1841 ntBASIC20.78■□□□□ 0.92
SMC4Q9NTJ3 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SMC4Q9NTJ3 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC20.78■□□□□ 0.92
SMC4Q9NTJ3 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC20.78■□□□□ 0.92
SMC4Q9NTJ3 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SMC4Q9NTJ3 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms