Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
SIX2Q9NPC8 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
SIX2Q9NPC8 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
SIX2Q9NPC8 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC17.36■□□□□ 0.37
SIX2Q9NPC8 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.37
SIX2Q9NPC8 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
SIX2Q9NPC8 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
SIX2Q9NPC8 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
SIX2Q9NPC8 AC073347.1-201ENST00000421633 2643 ntBASIC17.35■□□□□ 0.37
SIX2Q9NPC8 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
SIX2Q9NPC8 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SIX2Q9NPC8 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
SIX2Q9NPC8 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
SIX2Q9NPC8 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
SIX2Q9NPC8 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SIX2Q9NPC8 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC17.35■□□□□ 0.37
SIX2Q9NPC8 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
SIX2Q9NPC8 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC17.35■□□□□ 0.37
SIX2Q9NPC8 CD82-202ENST00000342935 967 ntTSL 5 BASIC17.35■□□□□ 0.37
SIX2Q9NPC8 PP14571-201ENST00000404327 934 ntTSL 2 BASIC17.35■□□□□ 0.37
SIX2Q9NPC8 RPS8P6-201ENST00000426177 609 ntBASIC17.35■□□□□ 0.37
SIX2Q9NPC8 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC17.35■□□□□ 0.37
SIX2Q9NPC8 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
SIX2Q9NPC8 RNA5SP410-201ENST00000516285 106 ntBASIC17.35■□□□□ 0.37
SIX2Q9NPC8 KRT8P23-201ENST00000560090 1207 ntBASIC17.35■□□□□ 0.37
SIX2Q9NPC8 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC17.35■□□□□ 0.37
SIX2Q9NPC8 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
SIX2Q9NPC8 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC17.35■□□□□ 0.37
SIX2Q9NPC8 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC17.35■□□□□ 0.37
SIX2Q9NPC8 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
SIX2Q9NPC8 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SIX2Q9NPC8 AMT-233ENST00000636522 1620 ntTSL 2 BASIC17.35■□□□□ 0.37
SIX2Q9NPC8 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
SIX2Q9NPC8 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC17.35■□□□□ 0.37
SIX2Q9NPC8 LCK-206ENST00000373564 2137 ntTSL 5 BASIC17.35■□□□□ 0.37
SIX2Q9NPC8 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
SIX2Q9NPC8 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC17.35■□□□□ 0.37
SIX2Q9NPC8 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SIX2Q9NPC8 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SIX2Q9NPC8 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC17.34■□□□□ 0.37
SIX2Q9NPC8 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC17.34■□□□□ 0.37
SIX2Q9NPC8 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SIX2Q9NPC8 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC17.34■□□□□ 0.37
SIX2Q9NPC8 BANP-201ENST00000286122 2368 ntTSL 5 BASIC17.34■□□□□ 0.37
SIX2Q9NPC8 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SIX2Q9NPC8 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC17.34■□□□□ 0.37
SIX2Q9NPC8 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SIX2Q9NPC8 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
SIX2Q9NPC8 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC17.34■□□□□ 0.37
SIX2Q9NPC8 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
SIX2Q9NPC8 ELL2P1-201ENST00000413990 1906 ntBASIC17.34■□□□□ 0.37
SIX2Q9NPC8 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC17.34■□□□□ 0.37
SIX2Q9NPC8 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC17.34■□□□□ 0.37
SIX2Q9NPC8 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC17.34■□□□□ 0.37
SIX2Q9NPC8 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
SIX2Q9NPC8 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SIX2Q9NPC8 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC17.34■□□□□ 0.37
SIX2Q9NPC8 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC17.34■□□□□ 0.37
SIX2Q9NPC8 PUS1-205ENST00000535067 838 ntTSL 3 BASIC17.34■□□□□ 0.37
SIX2Q9NPC8 SLC25A39P2-201ENST00000537614 270 ntBASIC17.34■□□□□ 0.37
SIX2Q9NPC8 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC17.34■□□□□ 0.37
SIX2Q9NPC8 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
SIX2Q9NPC8 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
SIX2Q9NPC8 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC17.34■□□□□ 0.37
SIX2Q9NPC8 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
SIX2Q9NPC8 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC17.34■□□□□ 0.37
SIX2Q9NPC8 AC020658.6-201ENST00000623564 1870 ntBASIC17.34■□□□□ 0.37
SIX2Q9NPC8 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC17.34■□□□□ 0.37
SIX2Q9NPC8 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC17.34■□□□□ 0.37
SIX2Q9NPC8 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
SIX2Q9NPC8 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
SIX2Q9NPC8 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
SIX2Q9NPC8 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC17.34■□□□□ 0.37
SIX2Q9NPC8 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
SIX2Q9NPC8 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
SIX2Q9NPC8 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
SIX2Q9NPC8 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC17.33■□□□□ 0.37
SIX2Q9NPC8 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC17.33■□□□□ 0.37
SIX2Q9NPC8 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
SIX2Q9NPC8 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC17.33■□□□□ 0.37
SIX2Q9NPC8 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
SIX2Q9NPC8 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.37
SIX2Q9NPC8 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
SIX2Q9NPC8 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC17.33■□□□□ 0.37
SIX2Q9NPC8 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
SIX2Q9NPC8 AC022532.1-201ENST00000624563 1728 ntBASIC17.33■□□□□ 0.37
SIX2Q9NPC8 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
SIX2Q9NPC8 ZBTB45P2-201ENST00000452245 1531 ntBASIC17.33■□□□□ 0.37
SIX2Q9NPC8 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
SIX2Q9NPC8 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SIX2Q9NPC8 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC17.33■□□□□ 0.36
SIX2Q9NPC8 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
SIX2Q9NPC8 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC17.33■□□□□ 0.36
SIX2Q9NPC8 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SIX2Q9NPC8 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SIX2Q9NPC8 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC17.33■□□□□ 0.36
SIX2Q9NPC8 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC17.33■□□□□ 0.36
SIX2Q9NPC8 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
SIX2Q9NPC8 CBR1-202ENST00000399191 838 ntTSL 3 BASIC17.33■□□□□ 0.36
SIX2Q9NPC8 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC17.33■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 38.3 ms