Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
LINC00477Q96M19 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC12.21□□□□□ -0.45
LINC00477Q96M19 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
LINC00477Q96M19 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC12.21□□□□□ -0.45
LINC00477Q96M19 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC12.21□□□□□ -0.45
LINC00477Q96M19 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC12.21□□□□□ -0.45
LINC00477Q96M19 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
LINC00477Q96M19 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC12.21□□□□□ -0.45
LINC00477Q96M19 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC12.21□□□□□ -0.45
LINC00477Q96M19 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC12.21□□□□□ -0.45
LINC00477Q96M19 AL365330.1-201ENST00000607459 531 ntBASIC12.21□□□□□ -0.45
LINC00477Q96M19 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC12.21□□□□□ -0.45
LINC00477Q96M19 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC12.21□□□□□ -0.45
LINC00477Q96M19 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC12.21□□□□□ -0.45
LINC00477Q96M19 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC12.21□□□□□ -0.45
LINC00477Q96M19 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
LINC00477Q96M19 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC12.21□□□□□ -0.45
LINC00477Q96M19 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
LINC00477Q96M19 TSC2-203ENST00000382538 5264 ntAPPRIS ALT2 TSL 2 BASIC12.21□□□□□ -0.46
LINC00477Q96M19 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
LINC00477Q96M19 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC12.21□□□□□ -0.46
LINC00477Q96M19 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
LINC00477Q96M19 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC12.21□□□□□ -0.46
LINC00477Q96M19 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC12.21□□□□□ -0.46
LINC00477Q96M19 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
LINC00477Q96M19 SYAP1-201ENST00000380155 6129 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
LINC00477Q96M19 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC12.21□□□□□ -0.46
LINC00477Q96M19 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
LINC00477Q96M19 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC12.21□□□□□ -0.46
LINC00477Q96M19 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC12.21□□□□□ -0.46
LINC00477Q96M19 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC12.21□□□□□ -0.46
LINC00477Q96M19 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC12.21□□□□□ -0.46
LINC00477Q96M19 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC12.21□□□□□ -0.46
LINC00477Q96M19 TTC28-AS1-207ENST00000428584 5859 ntTSL 1 (best) BASIC12.21□□□□□ -0.46
LINC00477Q96M19 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
LINC00477Q96M19 CLASP2-204ENST00000399362 7282 ntAPPRIS ALT2 TSL 5 BASIC12.2□□□□□ -0.46
LINC00477Q96M19 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
LINC00477Q96M19 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC12.2□□□□□ -0.46
LINC00477Q96M19 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC12.2□□□□□ -0.46
LINC00477Q96M19 SLCO4C1-201ENST00000310954 5334 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
LINC00477Q96M19 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC12.2□□□□□ -0.46
LINC00477Q96M19 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC12.2□□□□□ -0.46
LINC00477Q96M19 MEF2D-201ENST00000348159 5965 ntAPPRIS P3 TSL 1 (best) BASIC12.2□□□□□ -0.46
LINC00477Q96M19 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
LINC00477Q96M19 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC12.2□□□□□ -0.46
LINC00477Q96M19 EXT1-201ENST00000378204 8270 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
LINC00477Q96M19 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
LINC00477Q96M19 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
LINC00477Q96M19 MAGI1-201ENST00000330909 7415 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
LINC00477Q96M19 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
LINC00477Q96M19 ADAMTS14-202ENST00000373208 5269 ntAPPRIS P4 TSL 2 BASIC12.2□□□□□ -0.46
LINC00477Q96M19 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC12.2□□□□□ -0.46
LINC00477Q96M19 KCTD15-201ENST00000284006 4918 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
LINC00477Q96M19 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
LINC00477Q96M19 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC12.2□□□□□ -0.46
LINC00477Q96M19 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
LINC00477Q96M19 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC12.2□□□□□ -0.46
LINC00477Q96M19 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC12.2□□□□□ -0.46
LINC00477Q96M19 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
LINC00477Q96M19 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC12.2□□□□□ -0.46
LINC00477Q96M19 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC12.2□□□□□ -0.46
LINC00477Q96M19 HNRNPDP1-201ENST00000439535 754 ntBASIC12.2□□□□□ -0.46
LINC00477Q96M19 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC12.2□□□□□ -0.46
LINC00477Q96M19 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC12.2□□□□□ -0.46
LINC00477Q96M19 KRT18P34-201ENST00000488218 1270 ntBASIC12.2□□□□□ -0.46
LINC00477Q96M19 CD63-210ENST00000550776 870 ntTSL 5 BASIC12.2□□□□□ -0.46
LINC00477Q96M19 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC12.2□□□□□ -0.46
LINC00477Q96M19 MIR4751-201ENST00000578027 74 ntBASIC12.2□□□□□ -0.46
LINC00477Q96M19 TCAP-202ENST00000578283 583 ntTSL 5 BASIC12.2□□□□□ -0.46
LINC00477Q96M19 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC12.2□□□□□ -0.46
LINC00477Q96M19 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC12.2□□□□□ -0.46
LINC00477Q96M19 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC12.2□□□□□ -0.46
LINC00477Q96M19 AC021683.3-202ENST00000592572 4440 ntTSL 5 BASIC12.2□□□□□ -0.46
LINC00477Q96M19 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
LINC00477Q96M19 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC12.2□□□□□ -0.46
LINC00477Q96M19 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC12.2□□□□□ -0.46
LINC00477Q96M19 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
LINC00477Q96M19 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC12.2□□□□□ -0.46
LINC00477Q96M19 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
LINC00477Q96M19 SLC9A7P1-201ENST00000554295 3311 ntBASIC12.2□□□□□ -0.46
LINC00477Q96M19 PHLDA1-201ENST00000266671 8069 ntAPPRIS P2 TSL 1 (best) BASIC12.2□□□□□ -0.46
LINC00477Q96M19 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC12.2□□□□□ -0.46
LINC00477Q96M19 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
LINC00477Q96M19 FADS2-201ENST00000257261 2964 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
LINC00477Q96M19 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC12.2□□□□□ -0.46
LINC00477Q96M19 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
LINC00477Q96M19 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC12.2□□□□□ -0.46
LINC00477Q96M19 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
LINC00477Q96M19 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
LINC00477Q96M19 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
LINC00477Q96M19 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
LINC00477Q96M19 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC12.2□□□□□ -0.46
LINC00477Q96M19 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
LINC00477Q96M19 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
LINC00477Q96M19 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
LINC00477Q96M19 SMARCA4-207ENST00000541122 5139 ntAPPRIS P4 TSL 5 BASIC12.2□□□□□ -0.46
LINC00477Q96M19 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC12.19□□□□□ -0.46
LINC00477Q96M19 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
LINC00477Q96M19 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC12.19□□□□□ -0.46
LINC00477Q96M19 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms