Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 AC009093.7-201ENST00000623853 1223 ntBASIC19.38■□□□□ 0.69
CHMP4CQ96CF2 INPPL1-207ENST00000538751 4656 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
CHMP4CQ96CF2 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CHMP4CQ96CF2 AL139423.1-201ENST00000606802 7923 ntTSL 5 BASIC19.38■□□□□ 0.69
CHMP4CQ96CF2 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC19.38■□□□□ 0.69
CHMP4CQ96CF2 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
CHMP4CQ96CF2 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC19.38■□□□□ 0.69
CHMP4CQ96CF2 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
CHMP4CQ96CF2 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC19.38■□□□□ 0.69
CHMP4CQ96CF2 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
CHMP4CQ96CF2 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC19.37■□□□□ 0.69
CHMP4CQ96CF2 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
CHMP4CQ96CF2 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
CHMP4CQ96CF2 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC19.37■□□□□ 0.69
CHMP4CQ96CF2 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
CHMP4CQ96CF2 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
CHMP4CQ96CF2 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC19.37■□□□□ 0.69
CHMP4CQ96CF2 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC19.37■□□□□ 0.69
CHMP4CQ96CF2 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC19.37■□□□□ 0.69
CHMP4CQ96CF2 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
CHMP4CQ96CF2 KIF3A-202ENST00000378746 6325 ntAPPRIS P3 TSL 5 BASIC19.37■□□□□ 0.69
CHMP4CQ96CF2 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC19.37■□□□□ 0.69
CHMP4CQ96CF2 MYLK2-202ENST00000375994 2956 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CHMP4CQ96CF2 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
CHMP4CQ96CF2 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CHMP4CQ96CF2 PCDH8P1-201ENST00000428983 2773 ntBASIC19.37■□□□□ 0.69
CHMP4CQ96CF2 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC19.37■□□□□ 0.69
CHMP4CQ96CF2 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
CHMP4CQ96CF2 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
CHMP4CQ96CF2 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC19.37■□□□□ 0.69
CHMP4CQ96CF2 WDR53-203ENST00000429115 683 ntTSL 2 BASIC19.37■□□□□ 0.69
CHMP4CQ96CF2 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC19.37■□□□□ 0.69
CHMP4CQ96CF2 VPS29-207ENST00000549970 818 ntTSL 3 BASIC19.37■□□□□ 0.69
CHMP4CQ96CF2 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC19.37■□□□□ 0.69
CHMP4CQ96CF2 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
CHMP4CQ96CF2 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC19.37■□□□□ 0.69
CHMP4CQ96CF2 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC19.37■□□□□ 0.69
CHMP4CQ96CF2 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
CHMP4CQ96CF2 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
CHMP4CQ96CF2 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CHMP4CQ96CF2 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CHMP4CQ96CF2 UBR5-207ENST00000520539 10297 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
CHMP4CQ96CF2 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
CHMP4CQ96CF2 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
CHMP4CQ96CF2 AL596087.1-201ENST00000400979 1969 ntBASIC19.37■□□□□ 0.69
CHMP4CQ96CF2 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC19.37■□□□□ 0.69
CHMP4CQ96CF2 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CHMP4CQ96CF2 PKDREJ-201ENST00000253255 7693 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
CHMP4CQ96CF2 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CHMP4CQ96CF2 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC19.36■□□□□ 0.69
CHMP4CQ96CF2 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC19.36■□□□□ 0.69
CHMP4CQ96CF2 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
CHMP4CQ96CF2 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
CHMP4CQ96CF2 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC19.36■□□□□ 0.69
CHMP4CQ96CF2 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
CHMP4CQ96CF2 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
CHMP4CQ96CF2 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CHMP4CQ96CF2 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CHMP4CQ96CF2 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
CHMP4CQ96CF2 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC19.36■□□□□ 0.69
CHMP4CQ96CF2 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
CHMP4CQ96CF2 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC19.36■□□□□ 0.69
CHMP4CQ96CF2 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
CHMP4CQ96CF2 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
CHMP4CQ96CF2 PNMT-202ENST00000394246 821 ntTSL 2 BASIC19.36■□□□□ 0.69
CHMP4CQ96CF2 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
CHMP4CQ96CF2 VMO1-203ENST00000416307 712 ntTSL 2 BASIC19.36■□□□□ 0.69
CHMP4CQ96CF2 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
CHMP4CQ96CF2 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC19.36■□□□□ 0.69
CHMP4CQ96CF2 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC19.36■□□□□ 0.69
CHMP4CQ96CF2 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC19.36■□□□□ 0.69
CHMP4CQ96CF2 ORC5-208ENST00000626700 344 ntTSL 3 BASIC19.36■□□□□ 0.69
CHMP4CQ96CF2 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC19.36■□□□□ 0.69
CHMP4CQ96CF2 U82695.1-201ENST00000635752 1889 ntBASIC19.36■□□□□ 0.69
CHMP4CQ96CF2 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC19.36■□□□□ 0.69
CHMP4CQ96CF2 PRDM1-203ENST00000369096 5164 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CHMP4CQ96CF2 AL662844.4-201ENST00000606367 2838 ntBASIC19.36■□□□□ 0.69
CHMP4CQ96CF2 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
CHMP4CQ96CF2 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CHMP4CQ96CF2 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
CHMP4CQ96CF2 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
CHMP4CQ96CF2 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
CHMP4CQ96CF2 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CHMP4CQ96CF2 AC008677.1-201ENST00000519230 1561 ntBASIC19.36■□□□□ 0.69
CHMP4CQ96CF2 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC19.35■□□□□ 0.69
CHMP4CQ96CF2 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CHMP4CQ96CF2 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC19.35■□□□□ 0.69
CHMP4CQ96CF2 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC19.35■□□□□ 0.69
CHMP4CQ96CF2 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
CHMP4CQ96CF2 ANKRD33B-201ENST00000296657 9188 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
CHMP4CQ96CF2 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
CHMP4CQ96CF2 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CHMP4CQ96CF2 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CHMP4CQ96CF2 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
CHMP4CQ96CF2 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CHMP4CQ96CF2 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
CHMP4CQ96CF2 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
CHMP4CQ96CF2 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CHMP4CQ96CF2 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
CHMP4CQ96CF2 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms