Protein–RNA interactions for Protein: Q92994

BRF1, Transcription factor IIIB 90 kDa subunit, humanhuman

Predictions only

Length 677 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF1Q92994 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
BRF1Q92994 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC19.1■□□□□ 0.65
BRF1Q92994 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
BRF1Q92994 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
BRF1Q92994 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC19.1■□□□□ 0.65
BRF1Q92994 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
BRF1Q92994 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
BRF1Q92994 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC19.1■□□□□ 0.65
BRF1Q92994 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC19.1■□□□□ 0.65
BRF1Q92994 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
BRF1Q92994 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
BRF1Q92994 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
BRF1Q92994 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
BRF1Q92994 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
BRF1Q92994 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
BRF1Q92994 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
BRF1Q92994 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC19.09■□□□□ 0.65
BRF1Q92994 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
BRF1Q92994 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
BRF1Q92994 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC19.09■□□□□ 0.65
BRF1Q92994 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
BRF1Q92994 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
BRF1Q92994 MIR346-201ENST00000362234 95 ntBASIC19.09■□□□□ 0.65
BRF1Q92994 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
BRF1Q92994 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
BRF1Q92994 GPX1P2-201ENST00000429271 606 ntBASIC19.09■□□□□ 0.65
BRF1Q92994 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC19.09■□□□□ 0.65
BRF1Q92994 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC19.09■□□□□ 0.65
BRF1Q92994 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC19.09■□□□□ 0.65
BRF1Q92994 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC19.09■□□□□ 0.65
BRF1Q92994 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC19.09■□□□□ 0.65
BRF1Q92994 MIR4469-201ENST00000583919 79 ntBASIC19.09■□□□□ 0.65
BRF1Q92994 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC19.09■□□□□ 0.65
BRF1Q92994 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC19.09■□□□□ 0.65
BRF1Q92994 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
BRF1Q92994 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC19.09■□□□□ 0.65
BRF1Q92994 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
BRF1Q92994 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
BRF1Q92994 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
BRF1Q92994 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
BRF1Q92994 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC19.09■□□□□ 0.65
BRF1Q92994 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC19.09■□□□□ 0.65
BRF1Q92994 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
BRF1Q92994 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
BRF1Q92994 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC19.09■□□□□ 0.65
BRF1Q92994 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.65
BRF1Q92994 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC19.08■□□□□ 0.65
BRF1Q92994 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
BRF1Q92994 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
BRF1Q92994 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC19.08■□□□□ 0.65
BRF1Q92994 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC19.08■□□□□ 0.65
BRF1Q92994 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC19.08■□□□□ 0.65
BRF1Q92994 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC19.08■□□□□ 0.65
BRF1Q92994 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC19.08■□□□□ 0.65
BRF1Q92994 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC19.08■□□□□ 0.65
BRF1Q92994 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.65
BRF1Q92994 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC19.08■□□□□ 0.65
BRF1Q92994 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
BRF1Q92994 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
BRF1Q92994 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
BRF1Q92994 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC19.08■□□□□ 0.65
BRF1Q92994 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
BRF1Q92994 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC19.08■□□□□ 0.64
BRF1Q92994 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
BRF1Q92994 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
BRF1Q92994 BX842568.4-201ENST00000421222 227 ntBASIC19.08■□□□□ 0.64
BRF1Q92994 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC19.08■□□□□ 0.64
BRF1Q92994 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC19.08■□□□□ 0.64
BRF1Q92994 AC245100.5-201ENST00000452108 331 ntBASIC19.08■□□□□ 0.64
BRF1Q92994 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC19.08■□□□□ 0.64
BRF1Q92994 AC069335.1-201ENST00000489972 472 ntBASIC19.08■□□□□ 0.64
BRF1Q92994 AC112482.1-201ENST00000492080 688 ntBASIC19.08■□□□□ 0.64
BRF1Q92994 YBX1P5-201ENST00000509441 847 ntBASIC19.08■□□□□ 0.64
BRF1Q92994 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC19.08■□□□□ 0.64
BRF1Q92994 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC19.08■□□□□ 0.64
BRF1Q92994 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC19.08■□□□□ 0.64
BRF1Q92994 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC19.08■□□□□ 0.64
BRF1Q92994 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC19.08■□□□□ 0.64
BRF1Q92994 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.64
BRF1Q92994 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC19.08■□□□□ 0.64
BRF1Q92994 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC19.08■□□□□ 0.64
BRF1Q92994 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
BRF1Q92994 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
BRF1Q92994 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC19.08■□□□□ 0.64
BRF1Q92994 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
BRF1Q92994 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
BRF1Q92994 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC19.08■□□□□ 0.64
BRF1Q92994 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
BRF1Q92994 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC19.08■□□□□ 0.64
BRF1Q92994 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC19.08■□□□□ 0.64
BRF1Q92994 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
BRF1Q92994 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC19.08■□□□□ 0.64
BRF1Q92994 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
BRF1Q92994 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
BRF1Q92994 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC19.08■□□□□ 0.64
BRF1Q92994 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.64
BRF1Q92994 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
BRF1Q92994 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC19.07■□□□□ 0.64
BRF1Q92994 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC19.07■□□□□ 0.64
BRF1Q92994 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 51 ms