Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC16.24■□□□□ 0.19
HDDC3Q8N4P3 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC16.24■□□□□ 0.19
HDDC3Q8N4P3 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC16.24■□□□□ 0.19
HDDC3Q8N4P3 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
HDDC3Q8N4P3 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
HDDC3Q8N4P3 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
HDDC3Q8N4P3 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
HDDC3Q8N4P3 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC16.23■□□□□ 0.19
HDDC3Q8N4P3 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
HDDC3Q8N4P3 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
HDDC3Q8N4P3 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
HDDC3Q8N4P3 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC16.23■□□□□ 0.19
HDDC3Q8N4P3 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
HDDC3Q8N4P3 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
HDDC3Q8N4P3 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
HDDC3Q8N4P3 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
HDDC3Q8N4P3 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC16.23■□□□□ 0.19
HDDC3Q8N4P3 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
HDDC3Q8N4P3 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
HDDC3Q8N4P3 OSM-203ENST00000403463 464 ntTSL 3 BASIC16.23■□□□□ 0.19
HDDC3Q8N4P3 GNAQP1-201ENST00000444815 1067 ntBASIC16.23■□□□□ 0.19
HDDC3Q8N4P3 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC16.23■□□□□ 0.19
HDDC3Q8N4P3 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
HDDC3Q8N4P3 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC16.23■□□□□ 0.19
HDDC3Q8N4P3 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC16.23■□□□□ 0.19
HDDC3Q8N4P3 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
HDDC3Q8N4P3 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC16.23■□□□□ 0.19
HDDC3Q8N4P3 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC16.23■□□□□ 0.19
HDDC3Q8N4P3 AC104794.3-201ENST00000566840 1248 ntBASIC16.23■□□□□ 0.19
HDDC3Q8N4P3 MIR6069-201ENST00000620069 79 ntBASIC16.23■□□□□ 0.19
HDDC3Q8N4P3 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC16.23■□□□□ 0.19
HDDC3Q8N4P3 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
HDDC3Q8N4P3 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
HDDC3Q8N4P3 FER1L4-210ENST00000615531 5998 ntBASIC16.23■□□□□ 0.19
HDDC3Q8N4P3 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC16.23■□□□□ 0.19
HDDC3Q8N4P3 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC16.23■□□□□ 0.19
HDDC3Q8N4P3 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
HDDC3Q8N4P3 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
HDDC3Q8N4P3 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
HDDC3Q8N4P3 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
HDDC3Q8N4P3 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
HDDC3Q8N4P3 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC16.23■□□□□ 0.19
HDDC3Q8N4P3 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
HDDC3Q8N4P3 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
HDDC3Q8N4P3 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC16.22■□□□□ 0.19
HDDC3Q8N4P3 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
HDDC3Q8N4P3 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
HDDC3Q8N4P3 AC106886.4-201ENST00000623557 2502 ntBASIC16.22■□□□□ 0.19
HDDC3Q8N4P3 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
HDDC3Q8N4P3 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
HDDC3Q8N4P3 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC16.22■□□□□ 0.19
HDDC3Q8N4P3 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
HDDC3Q8N4P3 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC16.22■□□□□ 0.19
HDDC3Q8N4P3 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
HDDC3Q8N4P3 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
HDDC3Q8N4P3 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
HDDC3Q8N4P3 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC16.22■□□□□ 0.19
HDDC3Q8N4P3 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
HDDC3Q8N4P3 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC16.22■□□□□ 0.19
HDDC3Q8N4P3 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC16.22■□□□□ 0.19
HDDC3Q8N4P3 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
HDDC3Q8N4P3 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
HDDC3Q8N4P3 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
HDDC3Q8N4P3 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
HDDC3Q8N4P3 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
HDDC3Q8N4P3 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
HDDC3Q8N4P3 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC16.22■□□□□ 0.19
HDDC3Q8N4P3 DGCR5-201ENST00000399539 862 ntBASIC16.22■□□□□ 0.19
HDDC3Q8N4P3 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
HDDC3Q8N4P3 ZFAND2B-203ENST00000409206 1159 ntTSL 2 BASIC16.22■□□□□ 0.19
HDDC3Q8N4P3 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC16.22■□□□□ 0.19
HDDC3Q8N4P3 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
HDDC3Q8N4P3 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC16.22■□□□□ 0.19
HDDC3Q8N4P3 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC16.22■□□□□ 0.19
HDDC3Q8N4P3 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC16.22■□□□□ 0.19
HDDC3Q8N4P3 IGHV3-72-202ENST00000621503 303 ntBASIC16.22■□□□□ 0.19
HDDC3Q8N4P3 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
HDDC3Q8N4P3 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
HDDC3Q8N4P3 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
HDDC3Q8N4P3 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
HDDC3Q8N4P3 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
HDDC3Q8N4P3 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC16.22■□□□□ 0.19
HDDC3Q8N4P3 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
HDDC3Q8N4P3 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
HDDC3Q8N4P3 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
HDDC3Q8N4P3 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
HDDC3Q8N4P3 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
HDDC3Q8N4P3 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC16.22■□□□□ 0.19
HDDC3Q8N4P3 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC16.22■□□□□ 0.19
HDDC3Q8N4P3 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC16.22■□□□□ 0.19
HDDC3Q8N4P3 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
HDDC3Q8N4P3 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC16.22■□□□□ 0.19
HDDC3Q8N4P3 AC080080.1-201ENST00000625121 2420 ntBASIC16.21■□□□□ 0.19
HDDC3Q8N4P3 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
HDDC3Q8N4P3 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
HDDC3Q8N4P3 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
HDDC3Q8N4P3 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
HDDC3Q8N4P3 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.19
HDDC3Q8N4P3 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
HDDC3Q8N4P3 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 51 ms