Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC18.52■□□□□ 0.56
SH3RF1Q7Z6J0 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
SH3RF1Q7Z6J0 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
SH3RF1Q7Z6J0 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC18.52■□□□□ 0.56
SH3RF1Q7Z6J0 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC18.52■□□□□ 0.56
SH3RF1Q7Z6J0 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC18.52■□□□□ 0.56
SH3RF1Q7Z6J0 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC18.52■□□□□ 0.56
SH3RF1Q7Z6J0 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC18.52■□□□□ 0.56
SH3RF1Q7Z6J0 ATP6V0B-211ENST00000498664 825 ntTSL 2 BASIC18.52■□□□□ 0.56
SH3RF1Q7Z6J0 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC18.52■□□□□ 0.56
SH3RF1Q7Z6J0 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SH3RF1Q7Z6J0 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC18.52■□□□□ 0.56
SH3RF1Q7Z6J0 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC18.52■□□□□ 0.56
SH3RF1Q7Z6J0 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
SH3RF1Q7Z6J0 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
SH3RF1Q7Z6J0 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
SH3RF1Q7Z6J0 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC18.52■□□□□ 0.56
SH3RF1Q7Z6J0 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
SH3RF1Q7Z6J0 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
SH3RF1Q7Z6J0 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
SH3RF1Q7Z6J0 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC18.52■□□□□ 0.55
SH3RF1Q7Z6J0 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
SH3RF1Q7Z6J0 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC18.52■□□□□ 0.55
SH3RF1Q7Z6J0 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC18.52■□□□□ 0.55
SH3RF1Q7Z6J0 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
SH3RF1Q7Z6J0 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
SH3RF1Q7Z6J0 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SH3RF1Q7Z6J0 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC18.51■□□□□ 0.55
SH3RF1Q7Z6J0 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC18.51■□□□□ 0.55
SH3RF1Q7Z6J0 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
SH3RF1Q7Z6J0 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SH3RF1Q7Z6J0 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SH3RF1Q7Z6J0 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC18.51■□□□□ 0.55
SH3RF1Q7Z6J0 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
SH3RF1Q7Z6J0 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SH3RF1Q7Z6J0 AC008741.2-201ENST00000612792 3115 ntBASIC18.51■□□□□ 0.55
SH3RF1Q7Z6J0 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC18.51■□□□□ 0.55
SH3RF1Q7Z6J0 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
SH3RF1Q7Z6J0 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SH3RF1Q7Z6J0 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC18.51■□□□□ 0.55
SH3RF1Q7Z6J0 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC18.51■□□□□ 0.55
SH3RF1Q7Z6J0 AC142381.1-201ENST00000426099 345 ntBASIC18.51■□□□□ 0.55
SH3RF1Q7Z6J0 AL031283.3-201ENST00000439788 727 ntTSL 3 BASIC18.51■□□□□ 0.55
SH3RF1Q7Z6J0 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SH3RF1Q7Z6J0 GIMAP3P-201ENST00000495150 836 ntBASIC18.51■□□□□ 0.55
SH3RF1Q7Z6J0 STOM-203ENST00000538954 1257 ntTSL 5 BASIC18.51■□□□□ 0.55
SH3RF1Q7Z6J0 ARL16-202ENST00000570561 768 ntTSL 2 BASIC18.51■□□□□ 0.55
SH3RF1Q7Z6J0 MIR3909-201ENST00000579518 119 ntBASIC18.51■□□□□ 0.55
SH3RF1Q7Z6J0 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC18.51■□□□□ 0.55
SH3RF1Q7Z6J0 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC18.51■□□□□ 0.55
SH3RF1Q7Z6J0 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC18.51■□□□□ 0.55
SH3RF1Q7Z6J0 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SH3RF1Q7Z6J0 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC18.51■□□□□ 0.55
SH3RF1Q7Z6J0 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SH3RF1Q7Z6J0 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SH3RF1Q7Z6J0 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
SH3RF1Q7Z6J0 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SH3RF1Q7Z6J0 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SH3RF1Q7Z6J0 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC18.51■□□□□ 0.55
SH3RF1Q7Z6J0 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
SH3RF1Q7Z6J0 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC18.5■□□□□ 0.55
SH3RF1Q7Z6J0 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SH3RF1Q7Z6J0 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SH3RF1Q7Z6J0 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC18.5■□□□□ 0.55
SH3RF1Q7Z6J0 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SH3RF1Q7Z6J0 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC18.5■□□□□ 0.55
SH3RF1Q7Z6J0 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
SH3RF1Q7Z6J0 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
SH3RF1Q7Z6J0 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
SH3RF1Q7Z6J0 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SH3RF1Q7Z6J0 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
SH3RF1Q7Z6J0 DPM2-202ENST00000373110 738 ntTSL 2 BASIC18.5■□□□□ 0.55
SH3RF1Q7Z6J0 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC18.5■□□□□ 0.55
SH3RF1Q7Z6J0 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC18.5■□□□□ 0.55
SH3RF1Q7Z6J0 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC18.5■□□□□ 0.55
SH3RF1Q7Z6J0 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
SH3RF1Q7Z6J0 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC18.5■□□□□ 0.55
SH3RF1Q7Z6J0 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC18.5■□□□□ 0.55
SH3RF1Q7Z6J0 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC18.5■□□□□ 0.55
SH3RF1Q7Z6J0 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC18.5■□□□□ 0.55
SH3RF1Q7Z6J0 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC18.5■□□□□ 0.55
SH3RF1Q7Z6J0 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SH3RF1Q7Z6J0 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
SH3RF1Q7Z6J0 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
SH3RF1Q7Z6J0 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC18.5■□□□□ 0.55
SH3RF1Q7Z6J0 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC18.5■□□□□ 0.55
SH3RF1Q7Z6J0 AL162727.3-201ENST00000635661 2787 ntBASIC18.5■□□□□ 0.55
SH3RF1Q7Z6J0 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC18.5■□□□□ 0.55
SH3RF1Q7Z6J0 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC18.5■□□□□ 0.55
SH3RF1Q7Z6J0 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SH3RF1Q7Z6J0 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC18.5■□□□□ 0.55
SH3RF1Q7Z6J0 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
SH3RF1Q7Z6J0 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC18.5■□□□□ 0.55
SH3RF1Q7Z6J0 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
SH3RF1Q7Z6J0 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
SH3RF1Q7Z6J0 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SH3RF1Q7Z6J0 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
SH3RF1Q7Z6J0 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
SH3RF1Q7Z6J0 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
SH3RF1Q7Z6J0 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC18.49■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms