Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC19.6■□□□□ 0.73
VPS53Q5VIR6 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
VPS53Q5VIR6 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
VPS53Q5VIR6 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
VPS53Q5VIR6 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC19.6■□□□□ 0.73
VPS53Q5VIR6 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC19.6■□□□□ 0.73
VPS53Q5VIR6 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
VPS53Q5VIR6 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
VPS53Q5VIR6 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
VPS53Q5VIR6 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC19.6■□□□□ 0.73
VPS53Q5VIR6 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
VPS53Q5VIR6 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
VPS53Q5VIR6 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC19.6■□□□□ 0.73
VPS53Q5VIR6 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC19.6■□□□□ 0.73
VPS53Q5VIR6 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC19.6■□□□□ 0.73
VPS53Q5VIR6 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC19.6■□□□□ 0.73
VPS53Q5VIR6 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC19.6■□□□□ 0.73
VPS53Q5VIR6 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
VPS53Q5VIR6 KRT8P23-201ENST00000560090 1207 ntBASIC19.6■□□□□ 0.73
VPS53Q5VIR6 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
VPS53Q5VIR6 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
VPS53Q5VIR6 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC19.6■□□□□ 0.73
VPS53Q5VIR6 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
VPS53Q5VIR6 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
VPS53Q5VIR6 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
VPS53Q5VIR6 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
VPS53Q5VIR6 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
VPS53Q5VIR6 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
VPS53Q5VIR6 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC19.6■□□□□ 0.73
VPS53Q5VIR6 PRDM1-203ENST00000369096 5164 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
VPS53Q5VIR6 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
VPS53Q5VIR6 SP100-205ENST00000409824 1802 ntTSL 5 BASIC19.6■□□□□ 0.73
VPS53Q5VIR6 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
VPS53Q5VIR6 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
VPS53Q5VIR6 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
VPS53Q5VIR6 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
VPS53Q5VIR6 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
VPS53Q5VIR6 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
VPS53Q5VIR6 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC19.59■□□□□ 0.73
VPS53Q5VIR6 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC19.59■□□□□ 0.73
VPS53Q5VIR6 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
VPS53Q5VIR6 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
VPS53Q5VIR6 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
VPS53Q5VIR6 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC19.59■□□□□ 0.73
VPS53Q5VIR6 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
VPS53Q5VIR6 AC023141.5-201ENST00000458585 616 ntBASIC19.59■□□□□ 0.73
VPS53Q5VIR6 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC19.59■□□□□ 0.73
VPS53Q5VIR6 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC19.59■□□□□ 0.73
VPS53Q5VIR6 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC19.59■□□□□ 0.73
VPS53Q5VIR6 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
VPS53Q5VIR6 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
VPS53Q5VIR6 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
VPS53Q5VIR6 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
VPS53Q5VIR6 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
VPS53Q5VIR6 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC19.59■□□□□ 0.73
VPS53Q5VIR6 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC19.59■□□□□ 0.73
VPS53Q5VIR6 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC19.59■□□□□ 0.73
VPS53Q5VIR6 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC19.59■□□□□ 0.73
VPS53Q5VIR6 LZTS1-201ENST00000265801 5459 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
VPS53Q5VIR6 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.73
VPS53Q5VIR6 AL603832.2-201ENST00000566195 2125 ntBASIC19.58■□□□□ 0.73
VPS53Q5VIR6 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
VPS53Q5VIR6 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC19.58■□□□□ 0.73
VPS53Q5VIR6 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
VPS53Q5VIR6 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC19.58■□□□□ 0.73
VPS53Q5VIR6 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
VPS53Q5VIR6 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
VPS53Q5VIR6 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC19.58■□□□□ 0.73
VPS53Q5VIR6 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.73
VPS53Q5VIR6 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
VPS53Q5VIR6 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
VPS53Q5VIR6 CD81-202ENST00000381036 880 ntTSL 3 BASIC19.58■□□□□ 0.72
VPS53Q5VIR6 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.72
VPS53Q5VIR6 URGCP-206ENST00000446958 365 ntTSL 2 BASIC19.58■□□□□ 0.72
VPS53Q5VIR6 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
VPS53Q5VIR6 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC19.58■□□□□ 0.72
VPS53Q5VIR6 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC19.58■□□□□ 0.72
VPS53Q5VIR6 AC009093.7-201ENST00000623853 1223 ntBASIC19.58■□□□□ 0.72
VPS53Q5VIR6 AC008741.2-201ENST00000612792 3115 ntBASIC19.58■□□□□ 0.72
VPS53Q5VIR6 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC19.58■□□□□ 0.72
VPS53Q5VIR6 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.72
VPS53Q5VIR6 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC19.58■□□□□ 0.72
VPS53Q5VIR6 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
VPS53Q5VIR6 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
VPS53Q5VIR6 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
VPS53Q5VIR6 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC19.58■□□□□ 0.72
VPS53Q5VIR6 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC19.58■□□□□ 0.72
VPS53Q5VIR6 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
VPS53Q5VIR6 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC19.58■□□□□ 0.72
VPS53Q5VIR6 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.72
VPS53Q5VIR6 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
VPS53Q5VIR6 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC19.58■□□□□ 0.72
VPS53Q5VIR6 AC024909.3-201ENST00000611513 2257 ntBASIC19.58■□□□□ 0.72
VPS53Q5VIR6 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC19.58■□□□□ 0.72
VPS53Q5VIR6 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC19.58■□□□□ 0.72
VPS53Q5VIR6 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.72
VPS53Q5VIR6 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
VPS53Q5VIR6 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
VPS53Q5VIR6 PGR-209ENST00000617858 2816 ntTSL 5 BASIC19.57■□□□□ 0.72
VPS53Q5VIR6 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC19.57■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 43.3 ms