Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
HNF4AP41235 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC15.79■□□□□ 0.12
HNF4AP41235 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC15.79■□□□□ 0.12
HNF4AP41235 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
HNF4AP41235 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
HNF4AP41235 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
HNF4AP41235 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
HNF4AP41235 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC15.79■□□□□ 0.12
HNF4AP41235 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
HNF4AP41235 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
HNF4AP41235 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
HNF4AP41235 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
HNF4AP41235 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC15.79■□□□□ 0.12
HNF4AP41235 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
HNF4AP41235 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC15.79■□□□□ 0.12
HNF4AP41235 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
HNF4AP41235 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
HNF4AP41235 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
HNF4AP41235 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC15.79■□□□□ 0.12
HNF4AP41235 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC15.79■□□□□ 0.12
HNF4AP41235 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC15.79■□□□□ 0.12
HNF4AP41235 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC15.79■□□□□ 0.12
HNF4AP41235 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC15.79■□□□□ 0.12
HNF4AP41235 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC15.79■□□□□ 0.12
HNF4AP41235 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC15.79■□□□□ 0.12
HNF4AP41235 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC15.79■□□□□ 0.12
HNF4AP41235 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
HNF4AP41235 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC15.79■□□□□ 0.12
HNF4AP41235 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
HNF4AP41235 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
HNF4AP41235 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC15.79■□□□□ 0.12
HNF4AP41235 TSPY26P-202ENST00000565928 3884 ntBASIC15.79■□□□□ 0.12
HNF4AP41235 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC15.79■□□□□ 0.12
HNF4AP41235 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
HNF4AP41235 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC15.79■□□□□ 0.12
HNF4AP41235 AL603832.2-201ENST00000566195 2125 ntBASIC15.79■□□□□ 0.12
HNF4AP41235 AL365203.3-201ENST00000609742 2057 ntBASIC15.79■□□□□ 0.12
HNF4AP41235 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC15.78■□□□□ 0.12
HNF4AP41235 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
HNF4AP41235 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
HNF4AP41235 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC15.78■□□□□ 0.12
HNF4AP41235 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
HNF4AP41235 P2RX5-TAX1BP3-201ENST00000550383 5905 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
HNF4AP41235 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
HNF4AP41235 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC15.78■□□□□ 0.12
HNF4AP41235 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC15.78■□□□□ 0.12
HNF4AP41235 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
HNF4AP41235 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC15.78■□□□□ 0.12
HNF4AP41235 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC15.78■□□□□ 0.12
HNF4AP41235 UBR5-207ENST00000520539 10297 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
HNF4AP41235 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
HNF4AP41235 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
HNF4AP41235 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC15.78■□□□□ 0.12
HNF4AP41235 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
HNF4AP41235 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC15.78■□□□□ 0.12
HNF4AP41235 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
HNF4AP41235 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC15.78■□□□□ 0.12
HNF4AP41235 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC15.78■□□□□ 0.12
HNF4AP41235 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
HNF4AP41235 COX10-202ENST00000429152 875 ntTSL 2 BASIC15.78■□□□□ 0.12
HNF4AP41235 HTR5BP-201ENST00000430851 1154 ntBASIC15.78■□□□□ 0.12
HNF4AP41235 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC15.78■□□□□ 0.12
HNF4AP41235 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC15.78■□□□□ 0.12
HNF4AP41235 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC15.78■□□□□ 0.12
HNF4AP41235 AC099522.2-201ENST00000607001 744 ntBASIC15.78■□□□□ 0.12
HNF4AP41235 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
HNF4AP41235 C20orf181-201ENST00000623918 480 ntBASIC15.78■□□□□ 0.12
HNF4AP41235 AC092902.6-201ENST00000641783 218 ntBASIC15.78■□□□□ 0.12
HNF4AP41235 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
HNF4AP41235 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC15.78■□□□□ 0.12
HNF4AP41235 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC15.78■□□□□ 0.12
HNF4AP41235 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC15.78■□□□□ 0.12
HNF4AP41235 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC15.78■□□□□ 0.12
HNF4AP41235 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
HNF4AP41235 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC15.78■□□□□ 0.12
HNF4AP41235 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC15.78■□□□□ 0.12
HNF4AP41235 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
HNF4AP41235 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC15.78■□□□□ 0.12
HNF4AP41235 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
HNF4AP41235 GNAQ-201ENST00000286548 6539 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
HNF4AP41235 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC15.78■□□□□ 0.12
HNF4AP41235 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
HNF4AP41235 ZSWIM8-201ENST00000398706 6062 ntTSL 2 BASIC15.77■□□□□ 0.12
HNF4AP41235 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC15.77■□□□□ 0.12
HNF4AP41235 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
HNF4AP41235 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC15.77■□□□□ 0.12
HNF4AP41235 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
HNF4AP41235 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC15.77■□□□□ 0.12
HNF4AP41235 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
HNF4AP41235 SETD1B-201ENST00000267197 5772 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.12
HNF4AP41235 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
HNF4AP41235 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
HNF4AP41235 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC15.77■□□□□ 0.12
HNF4AP41235 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
HNF4AP41235 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC15.77■□□□□ 0.12
HNF4AP41235 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.12
HNF4AP41235 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.12
HNF4AP41235 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.12
HNF4AP41235 AC024909.3-201ENST00000611513 2257 ntBASIC15.77■□□□□ 0.12
HNF4AP41235 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms