Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC19.08■□□□□ 0.65
COL4A5P29400 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
COL4A5P29400 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
COL4A5P29400 IP6K2-202ENST00000340879 1185 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
COL4A5P29400 AKR7A2P1-201ENST00000460134 915 ntBASIC19.08■□□□□ 0.65
COL4A5P29400 TUBB8-202ENST00000562809 820 ntTSL 5 BASIC19.08■□□□□ 0.65
COL4A5P29400 AC110285.1-205ENST00000572301 559 ntTSL 3 BASIC19.08■□□□□ 0.65
COL4A5P29400 AC015967.2-201ENST00000624092 234 ntBASIC19.08■□□□□ 0.65
COL4A5P29400 AC006435.4-201ENST00000625037 234 ntBASIC19.08■□□□□ 0.65
COL4A5P29400 AL356737.1-201ENST00000634391 234 ntBASIC19.08■□□□□ 0.65
COL4A5P29400 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC19.08■□□□□ 0.65
COL4A5P29400 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC19.08■□□□□ 0.65
COL4A5P29400 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.65
COL4A5P29400 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
COL4A5P29400 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC19.08■□□□□ 0.64
COL4A5P29400 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
COL4A5P29400 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
COL4A5P29400 WDR3-202ENST00000369441 1035 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
COL4A5P29400 MIR1202-201ENST00000408529 83 ntBASIC19.08■□□□□ 0.64
COL4A5P29400 LINC01762-204ENST00000434879 436 ntTSL 2 BASIC19.08■□□□□ 0.64
COL4A5P29400 DGUOK-AS1-202ENST00000439192 563 ntTSL 2 BASIC19.08■□□□□ 0.64
COL4A5P29400 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
COL4A5P29400 BX284668.4-201ENST00000453917 508 ntBASIC19.08■□□□□ 0.64
COL4A5P29400 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
COL4A5P29400 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC19.08■□□□□ 0.64
COL4A5P29400 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC19.08■□□□□ 0.64
COL4A5P29400 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC19.08■□□□□ 0.64
COL4A5P29400 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC19.07■□□□□ 0.64
COL4A5P29400 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
COL4A5P29400 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC19.07■□□□□ 0.64
COL4A5P29400 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC19.07■□□□□ 0.64
COL4A5P29400 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
COL4A5P29400 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
COL4A5P29400 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
COL4A5P29400 AC005052.1-201ENST00000625181 2492 ntBASIC19.07■□□□□ 0.64
COL4A5P29400 AC138028.6-201ENST00000616106 1482 ntBASIC19.07■□□□□ 0.64
COL4A5P29400 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
COL4A5P29400 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
COL4A5P29400 TREM2-203ENST00000373122 1012 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
COL4A5P29400 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC19.07■□□□□ 0.64
COL4A5P29400 AC005077.2-201ENST00000449786 690 ntBASIC19.07■□□□□ 0.64
COL4A5P29400 ARTN-209ENST00000479128 471 ntTSL 3 BASIC19.07■□□□□ 0.64
COL4A5P29400 GAPDHP40-201ENST00000505218 1006 ntBASIC19.07■□□□□ 0.64
COL4A5P29400 SPATA24-205ENST00000509959 641 ntTSL 5 BASIC19.07■□□□□ 0.64
COL4A5P29400 KSR1-207ENST00000578981 748 ntTSL 4 BASIC19.07■□□□□ 0.64
COL4A5P29400 FXYD6-217ENST00000584394 669 ntTSL 3 BASIC19.07■□□□□ 0.64
COL4A5P29400 LGALS9C-215ENST00000584941 1104 ntTSL 5 BASIC19.07■□□□□ 0.64
COL4A5P29400 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC19.07■□□□□ 0.64
COL4A5P29400 AL450472.2-201ENST00000603663 1156 ntBASIC19.07■□□□□ 0.64
COL4A5P29400 AC145423.3-201ENST00000615987 467 ntBASIC19.07■□□□□ 0.64
COL4A5P29400 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
COL4A5P29400 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC19.07■□□□□ 0.64
COL4A5P29400 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
COL4A5P29400 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC19.07■□□□□ 0.64
COL4A5P29400 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC19.07■□□□□ 0.64
COL4A5P29400 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC19.07■□□□□ 0.64
COL4A5P29400 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
COL4A5P29400 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC19.07■□□□□ 0.64
COL4A5P29400 AHCYP2-201ENST00000430630 1300 ntBASIC19.07■□□□□ 0.64
COL4A5P29400 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
COL4A5P29400 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC19.07■□□□□ 0.64
COL4A5P29400 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC19.07■□□□□ 0.64
COL4A5P29400 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
COL4A5P29400 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC19.06■□□□□ 0.64
COL4A5P29400 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC19.06■□□□□ 0.64
COL4A5P29400 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC19.06■□□□□ 0.64
COL4A5P29400 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC19.06■□□□□ 0.64
COL4A5P29400 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
COL4A5P29400 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
COL4A5P29400 ARRB2-204ENST00000412477 1779 ntTSL 2 BASIC19.06■□□□□ 0.64
COL4A5P29400 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
COL4A5P29400 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
COL4A5P29400 CLIC1-206ENST00000375779 1127 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
COL4A5P29400 BTBD6P1-201ENST00000412176 1267 ntBASIC19.06■□□□□ 0.64
COL4A5P29400 AC004898.1-201ENST00000451057 766 ntBASIC19.06■□□□□ 0.64
COL4A5P29400 TP53AIP1-205ENST00000531399 806 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
COL4A5P29400 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC19.06■□□□□ 0.64
COL4A5P29400 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC19.06■□□□□ 0.64
COL4A5P29400 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC19.06■□□□□ 0.64
COL4A5P29400 PCMTD2-207ENST00000609372 1321 ntTSL 4 BASIC19.06■□□□□ 0.64
COL4A5P29400 AMT-233ENST00000636522 1620 ntTSL 2 BASIC19.06■□□□□ 0.64
COL4A5P29400 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
COL4A5P29400 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
COL4A5P29400 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
COL4A5P29400 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
COL4A5P29400 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
COL4A5P29400 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
COL4A5P29400 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
COL4A5P29400 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC19.06■□□□□ 0.64
COL4A5P29400 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
COL4A5P29400 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC19.05■□□□□ 0.64
COL4A5P29400 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC19.05■□□□□ 0.64
COL4A5P29400 TSHR-202ENST00000342443 1281 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
COL4A5P29400 ACKR1-201ENST00000368121 1240 ntBASIC19.05■□□□□ 0.64
COL4A5P29400 AC023310.1-201ENST00000554836 735 ntBASIC19.05■□□□□ 0.64
COL4A5P29400 LRRC37A6P-204ENST00000575554 573 ntTSL 3 BASIC19.05■□□□□ 0.64
COL4A5P29400 EEF1DP1-201ENST00000585891 896 ntBASIC19.05■□□□□ 0.64
COL4A5P29400 AC021594.1-201ENST00000587174 636 ntTSL 3 BASIC19.05■□□□□ 0.64
COL4A5P29400 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC19.05■□□□□ 0.64
COL4A5P29400 AC008403.1-201ENST00000595676 443 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 38.8 ms