Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 AC104596.1-201ENST00000507826 579 ntTSL 4 BASIC19.99■□□□□ 0.79
COL5A3P25940 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC19.99■□□□□ 0.79
COL5A3P25940 FBXL8-208ENST00000521920 574 ntTSL 4 BASIC19.99■□□□□ 0.79
COL5A3P25940 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
COL5A3P25940 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC19.99■□□□□ 0.79
COL5A3P25940 Metazoa_SRP.166-201ENST00000612530 253 ntBASIC19.99■□□□□ 0.79
COL5A3P25940 AC120498.9-201ENST00000339021 3867 ntBASIC19.99■□□□□ 0.79
COL5A3P25940 GRN-222ENST00000639447 1314 ntTSL 2 BASIC19.99■□□□□ 0.79
COL5A3P25940 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC19.99■□□□□ 0.79
COL5A3P25940 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC19.99■□□□□ 0.79
COL5A3P25940 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
COL5A3P25940 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC19.98■□□□□ 0.79
COL5A3P25940 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
COL5A3P25940 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC19.98■□□□□ 0.79
COL5A3P25940 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
COL5A3P25940 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
COL5A3P25940 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC19.98■□□□□ 0.79
COL5A3P25940 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
COL5A3P25940 EIF4EBP3-201ENST00000310331 691 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
COL5A3P25940 C3orf22-201ENST00000318225 1000 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
COL5A3P25940 SH3BGR-201ENST00000333634 1251 ntAPPRIS P2 TSL 1 (best) BASIC19.98■□□□□ 0.79
COL5A3P25940 HIST1H2AH-201ENST00000377459 387 ntAPPRIS P1 BASIC19.98■□□□□ 0.79
COL5A3P25940 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC19.98■□□□□ 0.79
COL5A3P25940 CBX3-203ENST00000409747 1717 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
COL5A3P25940 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
COL5A3P25940 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
COL5A3P25940 HSPB1P2-201ENST00000448722 546 ntBASIC19.98■□□□□ 0.79
COL5A3P25940 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
COL5A3P25940 HYAL3-206ENST00000513170 636 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
COL5A3P25940 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
COL5A3P25940 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
COL5A3P25940 AC025810.1-201ENST00000569986 981 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
COL5A3P25940 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC19.98■□□□□ 0.79
COL5A3P25940 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC19.98■□□□□ 0.79
COL5A3P25940 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
COL5A3P25940 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC19.97■□□□□ 0.79
COL5A3P25940 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC19.97■□□□□ 0.79
COL5A3P25940 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
COL5A3P25940 TK1-203ENST00000588734 1681 ntTSL 2 BASIC19.97■□□□□ 0.79
COL5A3P25940 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC19.97■□□□□ 0.79
COL5A3P25940 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC19.97■□□□□ 0.79
COL5A3P25940 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
COL5A3P25940 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
COL5A3P25940 COX6A2-201ENST00000287490 440 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
COL5A3P25940 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
COL5A3P25940 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC19.97■□□□□ 0.79
COL5A3P25940 OARD1-212ENST00000482515 832 ntTSL 2 BASIC19.97■□□□□ 0.79
COL5A3P25940 FHIT-208ENST00000492590 1081 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
COL5A3P25940 AC011365.2-201ENST00000520041 810 ntTSL 5 BASIC19.97■□□□□ 0.79
COL5A3P25940 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
COL5A3P25940 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC19.97■□□□□ 0.79
COL5A3P25940 AC120498.1-201ENST00000563593 476 ntTSL 4 BASIC19.97■□□□□ 0.79
COL5A3P25940 TNNT1-212ENST00000588981 1163 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
COL5A3P25940 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC19.97■□□□□ 0.79
COL5A3P25940 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
COL5A3P25940 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC19.97■□□□□ 0.79
COL5A3P25940 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
COL5A3P25940 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
COL5A3P25940 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC19.97■□□□□ 0.79
COL5A3P25940 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
COL5A3P25940 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC19.97■□□□□ 0.79
COL5A3P25940 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
COL5A3P25940 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
COL5A3P25940 PCMTD2-207ENST00000609372 1321 ntTSL 4 BASIC19.96■□□□□ 0.79
COL5A3P25940 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
COL5A3P25940 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
COL5A3P25940 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC19.96■□□□□ 0.79
COL5A3P25940 LINC01694-201ENST00000424569 821 ntTSL 5 BASIC19.96■□□□□ 0.79
COL5A3P25940 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC19.96■□□□□ 0.79
COL5A3P25940 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
COL5A3P25940 AL021546.1-201ENST00000551806 552 ntAPPRIS P1 TSL 3 BASIC19.96■□□□□ 0.79
COL5A3P25940 AP006547.1-201ENST00000563435 692 ntBASIC19.96■□□□□ 0.79
COL5A3P25940 AP003096.1-203ENST00000564469 563 ntTSL 3 BASIC19.96■□□□□ 0.79
COL5A3P25940 AC021594.1-201ENST00000587174 636 ntTSL 3 BASIC19.96■□□□□ 0.79
COL5A3P25940 AC011510.1-201ENST00000598541 286 ntTSL 3 BASIC19.96■□□□□ 0.79
COL5A3P25940 IKZF1-217ENST00000612658 962 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
COL5A3P25940 AL096828.3-201ENST00000615354 462 ntBASIC19.96■□□□□ 0.79
COL5A3P25940 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
COL5A3P25940 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
COL5A3P25940 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC19.96■□□□□ 0.79
COL5A3P25940 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC19.96■□□□□ 0.79
COL5A3P25940 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
COL5A3P25940 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
COL5A3P25940 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
COL5A3P25940 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
COL5A3P25940 HIST1H2AJ-201ENST00000333151 387 ntAPPRIS P1 BASIC19.96■□□□□ 0.79
COL5A3P25940 MIR663B-201ENST00000408361 115 ntBASIC19.96■□□□□ 0.79
COL5A3P25940 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC19.96■□□□□ 0.79
COL5A3P25940 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC19.96■□□□□ 0.79
COL5A3P25940 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
COL5A3P25940 SCARNA20.5-201ENST00000516991 142 ntBASIC19.96■□□□□ 0.79
COL5A3P25940 MIR4741-201ENST00000579822 90 ntBASIC19.96■□□□□ 0.79
COL5A3P25940 EEF1DP1-201ENST00000585891 896 ntBASIC19.96■□□□□ 0.79
COL5A3P25940 ECM1P1-201ENST00000604092 1279 ntBASIC19.96■□□□□ 0.79
COL5A3P25940 AC091271.1-201ENST00000611877 1162 ntBASIC19.96■□□□□ 0.79
COL5A3P25940 AC145423.3-201ENST00000615987 467 ntBASIC19.96■□□□□ 0.79
COL5A3P25940 RBM8A-206ENST00000632555 751 ntAPPRIS P1 TSL 3 BASIC19.96■□□□□ 0.79
COL5A3P25940 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC19.95■□□□□ 0.78
COL5A3P25940 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
COL5A3P25940 AC018735.1-201ENST00000437208 1502 ntBASIC19.95■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 38.3 ms