Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
COL3A1P02461 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
COL3A1P02461 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
COL3A1P02461 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
COL3A1P02461 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC21.11■□□□□ 0.97
COL3A1P02461 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
COL3A1P02461 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
COL3A1P02461 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
COL3A1P02461 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC21.11■□□□□ 0.97
COL3A1P02461 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC21.11■□□□□ 0.97
COL3A1P02461 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC21.11■□□□□ 0.97
COL3A1P02461 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC21.11■□□□□ 0.97
COL3A1P02461 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
COL3A1P02461 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
COL3A1P02461 TP73-209ENST00000603362 1668 ntTSL 5 BASIC21.11■□□□□ 0.97
COL3A1P02461 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
COL3A1P02461 ACE-203ENST00000413513 2237 ntTSL 2 BASIC21.11■□□□□ 0.97
COL3A1P02461 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
COL3A1P02461 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC21.11■□□□□ 0.97
COL3A1P02461 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
COL3A1P02461 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC21.1■□□□□ 0.97
COL3A1P02461 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
COL3A1P02461 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
COL3A1P02461 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
COL3A1P02461 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
COL3A1P02461 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
COL3A1P02461 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC21.1■□□□□ 0.97
COL3A1P02461 AL353779.1-201ENST00000434793 351 ntBASIC21.1■□□□□ 0.97
COL3A1P02461 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC21.1■□□□□ 0.97
COL3A1P02461 GALT-202ENST00000450095 1280 ntTSL 2 BASIC21.1■□□□□ 0.97
COL3A1P02461 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC21.1■□□□□ 0.97
COL3A1P02461 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
COL3A1P02461 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC21.1■□□□□ 0.97
COL3A1P02461 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC21.1■□□□□ 0.97
COL3A1P02461 CTBP2P3-201ENST00000585629 1255 ntBASIC21.1■□□□□ 0.97
COL3A1P02461 AC093726.1-201ENST00000608064 963 ntBASIC21.1■□□□□ 0.97
COL3A1P02461 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC21.1■□□□□ 0.97
COL3A1P02461 MIR8072-201ENST00000614241 80 ntBASIC21.1■□□□□ 0.97
COL3A1P02461 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC21.1■□□□□ 0.97
COL3A1P02461 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
COL3A1P02461 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
COL3A1P02461 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
COL3A1P02461 AC018695.7-201ENST00000624587 2492 ntBASIC21.09■□□□□ 0.97
COL3A1P02461 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC21.09■□□□□ 0.97
COL3A1P02461 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
COL3A1P02461 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
COL3A1P02461 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
COL3A1P02461 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
COL3A1P02461 OSM-203ENST00000403463 464 ntTSL 3 BASIC21.09■□□□□ 0.97
COL3A1P02461 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC21.09■□□□□ 0.97
COL3A1P02461 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC21.09■□□□□ 0.97
COL3A1P02461 AC123567.1-201ENST00000548294 1261 ntBASIC21.09■□□□□ 0.97
COL3A1P02461 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
COL3A1P02461 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC21.09■□□□□ 0.97
COL3A1P02461 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC21.09■□□□□ 0.97
COL3A1P02461 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC21.09■□□□□ 0.97
COL3A1P02461 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
COL3A1P02461 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
COL3A1P02461 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
COL3A1P02461 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
COL3A1P02461 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
COL3A1P02461 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
COL3A1P02461 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
COL3A1P02461 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC21.08■□□□□ 0.97
COL3A1P02461 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
COL3A1P02461 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC21.08■□□□□ 0.97
COL3A1P02461 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC21.08■□□□□ 0.97
COL3A1P02461 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC21.08■□□□□ 0.97
COL3A1P02461 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC21.08■□□□□ 0.97
COL3A1P02461 BRI3BPP1-201ENST00000594224 787 ntBASIC21.08■□□□□ 0.97
COL3A1P02461 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC21.08■□□□□ 0.97
COL3A1P02461 AC010491.1-201ENST00000563101 2797 ntBASIC21.08■□□□□ 0.97
COL3A1P02461 AL121723.1-201ENST00000445194 1519 ntBASIC21.08■□□□□ 0.97
COL3A1P02461 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.97
COL3A1P02461 AC020763.4-201ENST00000623414 4170 ntBASIC21.08■□□□□ 0.96
COL3A1P02461 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
COL3A1P02461 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC21.08■□□□□ 0.96
COL3A1P02461 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
COL3A1P02461 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
COL3A1P02461 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
COL3A1P02461 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
COL3A1P02461 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
COL3A1P02461 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC21.08■□□□□ 0.96
COL3A1P02461 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC21.08■□□□□ 0.96
COL3A1P02461 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
COL3A1P02461 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
COL3A1P02461 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
COL3A1P02461 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC21.07■□□□□ 0.96
COL3A1P02461 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
COL3A1P02461 METTL26-204ENST00000397665 558 ntTSL 2 BASIC21.07■□□□□ 0.96
COL3A1P02461 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC21.07■□□□□ 0.96
COL3A1P02461 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC21.07■□□□□ 0.96
COL3A1P02461 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC21.07■□□□□ 0.96
COL3A1P02461 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC21.07■□□□□ 0.96
COL3A1P02461 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC21.07■□□□□ 0.96
COL3A1P02461 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
COL3A1P02461 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC21.07■□□□□ 0.96
COL3A1P02461 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
COL3A1P02461 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
COL3A1P02461 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC21.07■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms