Protein–RNA interactions for Protein: P02458

COL2A1, Collagen alpha-1(II) chain, humanhuman

Predicted RBP Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1P02458 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL2A1P02458 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
COL2A1P02458 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
COL2A1P02458 AC026410.3-201ENST00000514280 936 ntBASIC18.65■□□□□ 0.58
COL2A1P02458 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC18.65■□□□□ 0.58
COL2A1P02458 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC18.65■□□□□ 0.58
COL2A1P02458 SLC25A47P1-201ENST00000531577 414 ntBASIC18.65■□□□□ 0.58
COL2A1P02458 TDH-203ENST00000531764 1110 ntBASIC18.65■□□□□ 0.58
COL2A1P02458 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL2A1P02458 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
COL2A1P02458 AC105020.3-201ENST00000566036 560 ntTSL 4 BASIC18.65■□□□□ 0.58
COL2A1P02458 AC015910.1-201ENST00000579400 975 ntBASIC18.65■□□□□ 0.58
COL2A1P02458 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC18.65■□□□□ 0.58
COL2A1P02458 AL022328.1-201ENST00000610050 478 ntBASIC18.65■□□□□ 0.58
COL2A1P02458 AC005252.2-201ENST00000624630 1141 ntBASIC18.65■□□□□ 0.58
COL2A1P02458 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC18.64■□□□□ 0.58
COL2A1P02458 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL2A1P02458 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL2A1P02458 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL2A1P02458 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC18.64■□□□□ 0.57
COL2A1P02458 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC18.64■□□□□ 0.57
COL2A1P02458 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
COL2A1P02458 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL2A1P02458 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC18.64■□□□□ 0.57
COL2A1P02458 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL2A1P02458 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL2A1P02458 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
COL2A1P02458 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC18.64■□□□□ 0.57
COL2A1P02458 SLC18A1-203ENST00000381608 1419 ntTSL 5 BASIC18.64■□□□□ 0.57
COL2A1P02458 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL2A1P02458 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL2A1P02458 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL2A1P02458 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
COL2A1P02458 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
COL2A1P02458 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL2A1P02458 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC18.64■□□□□ 0.57
COL2A1P02458 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL2A1P02458 MPV17-208ENST00000405076 603 ntTSL 5 BASIC18.64■□□□□ 0.57
COL2A1P02458 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
COL2A1P02458 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC18.64■□□□□ 0.57
COL2A1P02458 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC18.64■□□□□ 0.57
COL2A1P02458 PTP4A1P2-201ENST00000546033 454 ntBASIC18.64■□□□□ 0.57
COL2A1P02458 CLUHP6-201ENST00000580789 941 ntBASIC18.64■□□□□ 0.57
COL2A1P02458 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC18.64■□□□□ 0.57
COL2A1P02458 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC18.64■□□□□ 0.57
COL2A1P02458 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC18.64■□□□□ 0.57
COL2A1P02458 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC18.64■□□□□ 0.57
COL2A1P02458 AGER-206ENST00000375070 1463 ntTSL 5 BASIC18.64■□□□□ 0.57
COL2A1P02458 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
COL2A1P02458 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC18.64■□□□□ 0.57
COL2A1P02458 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
COL2A1P02458 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC18.63■□□□□ 0.57
COL2A1P02458 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC18.63■□□□□ 0.57
COL2A1P02458 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
COL2A1P02458 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
COL2A1P02458 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL2A1P02458 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
COL2A1P02458 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC18.63■□□□□ 0.57
COL2A1P02458 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
COL2A1P02458 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL2A1P02458 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC18.63■□□□□ 0.57
COL2A1P02458 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL2A1P02458 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
COL2A1P02458 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
COL2A1P02458 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL2A1P02458 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC18.63■□□□□ 0.57
COL2A1P02458 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL2A1P02458 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC18.63■□□□□ 0.57
COL2A1P02458 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL2A1P02458 LBX2-201ENST00000341396 886 ntTSL 3 BASIC18.63■□□□□ 0.57
COL2A1P02458 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
COL2A1P02458 IGHV3-35-201ENST00000390617 366 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
COL2A1P02458 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC18.63■□□□□ 0.57
COL2A1P02458 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC18.63■□□□□ 0.57
COL2A1P02458 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC18.63■□□□□ 0.57
COL2A1P02458 AC012441.1-201ENST00000446669 685 ntBASIC18.63■□□□□ 0.57
COL2A1P02458 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC18.63■□□□□ 0.57
COL2A1P02458 NOP2-211ENST00000540228 668 ntTSL 2 BASIC18.63■□□□□ 0.57
COL2A1P02458 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC18.63■□□□□ 0.57
COL2A1P02458 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC18.63■□□□□ 0.57
COL2A1P02458 RPS24-214ENST00000613865 538 ntTSL 5 BASIC18.63■□□□□ 0.57
COL2A1P02458 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL2A1P02458 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC18.63■□□□□ 0.57
COL2A1P02458 TP73-209ENST00000603362 1668 ntTSL 5 BASIC18.63■□□□□ 0.57
COL2A1P02458 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL2A1P02458 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC18.63■□□□□ 0.57
COL2A1P02458 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC18.62■□□□□ 0.57
COL2A1P02458 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC18.62■□□□□ 0.57
COL2A1P02458 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC18.62■□□□□ 0.57
COL2A1P02458 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL2A1P02458 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL2A1P02458 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
COL2A1P02458 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL2A1P02458 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC18.62■□□□□ 0.57
COL2A1P02458 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
COL2A1P02458 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC18.62■□□□□ 0.57
COL2A1P02458 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL2A1P02458 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
COL2A1P02458 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
COL2A1P02458 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 78.8 ms