Protein–RNA interactions for Protein: O96005

CLPTM1, Cleft lip and palate transmembrane protein 1, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLPTM1O96005 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CLPTM1O96005 DKFZP434H168-201ENST00000567381 1905 ntBASIC15.41■□□□□ 0.06
CLPTM1O96005 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC15.41■□□□□ 0.06
CLPTM1O96005 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC15.41■□□□□ 0.06
CLPTM1O96005 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC15.41■□□□□ 0.06
CLPTM1O96005 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CLPTM1O96005 RRP1B-201ENST00000340648 5090 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CLPTM1O96005 ANKLE2-210ENST00000542657 2446 ntTSL 2 BASIC15.41■□□□□ 0.06
CLPTM1O96005 RHPN1-201ENST00000289013 3683 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CLPTM1O96005 OPA1-204ENST00000361828 6381 ntAPPRIS ALT1 TSL 5 BASIC15.4■□□□□ 0.06
CLPTM1O96005 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CLPTM1O96005 KLHL26-201ENST00000300976 4407 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CLPTM1O96005 NELFA-202ENST00000382882 3343 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
CLPTM1O96005 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
CLPTM1O96005 PC-204ENST00000524491 1714 ntTSL 2 BASIC15.4■□□□□ 0.06
CLPTM1O96005 PAK2-201ENST00000327134 6139 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
CLPTM1O96005 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC15.4■□□□□ 0.06
CLPTM1O96005 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CLPTM1O96005 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
CLPTM1O96005 ADAMTS15-201ENST00000299164 5673 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CLPTM1O96005 NXF1-213ENST00000532297 2795 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
CLPTM1O96005 POR-201ENST00000394893 2532 ntTSL 5 BASIC15.4■□□□□ 0.06
CLPTM1O96005 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC15.4■□□□□ 0.06
CLPTM1O96005 HARS-203ENST00000431330 1774 ntTSL 2 BASIC15.4■□□□□ 0.06
CLPTM1O96005 AK4-202ENST00000395334 6998 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CLPTM1O96005 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CLPTM1O96005 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
CLPTM1O96005 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CLPTM1O96005 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CLPTM1O96005 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CLPTM1O96005 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
CLPTM1O96005 ENSA-206ENST00000361631 725 ntTSL 2 BASIC15.4■□□□□ 0.06
CLPTM1O96005 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
CLPTM1O96005 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC15.4■□□□□ 0.06
CLPTM1O96005 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CLPTM1O96005 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC15.4■□□□□ 0.06
CLPTM1O96005 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC15.4■□□□□ 0.06
CLPTM1O96005 AC074051.2-201ENST00000565115 352 ntBASIC15.4■□□□□ 0.06
CLPTM1O96005 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC15.4■□□□□ 0.06
CLPTM1O96005 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC15.4■□□□□ 0.06
CLPTM1O96005 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CLPTM1O96005 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
CLPTM1O96005 AC012313.10-201ENST00000623509 926 ntBASIC15.4■□□□□ 0.06
CLPTM1O96005 B4GALT3-213ENST00000622395 2414 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CLPTM1O96005 AC015656.1-201ENST00000624209 3578 ntBASIC15.4■□□□□ 0.06
CLPTM1O96005 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CLPTM1O96005 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC15.4■□□□□ 0.06
CLPTM1O96005 CNN3-207ENST00000545882 1902 ntTSL 2 BASIC15.4■□□□□ 0.06
CLPTM1O96005 AC138517.2-201ENST00000637503 2594 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
CLPTM1O96005 GGT3P-204ENST00000453783 1664 ntBASIC15.4■□□□□ 0.06
CLPTM1O96005 TAF6-205ENST00000437822 2318 ntTSL 2 BASIC15.4■□□□□ 0.06
CLPTM1O96005 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CLPTM1O96005 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
CLPTM1O96005 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC15.4■□□□□ 0.06
CLPTM1O96005 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CLPTM1O96005 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC15.4■□□□□ 0.06
CLPTM1O96005 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC15.4■□□□□ 0.06
CLPTM1O96005 RBM47-203ENST00000381795 4473 ntAPPRIS P3 TSL 2 BASIC15.4■□□□□ 0.06
CLPTM1O96005 ATP6V1H-201ENST00000355221 2365 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
CLPTM1O96005 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC15.4■□□□□ 0.06
CLPTM1O96005 ZNF800-201ENST00000265827 4203 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CLPTM1O96005 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
CLPTM1O96005 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC15.4■□□□□ 0.06
CLPTM1O96005 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
CLPTM1O96005 NAALADL1-204ENST00000358658 2699 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CLPTM1O96005 SGK1-205ENST00000413996 2686 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
CLPTM1O96005 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC15.4■□□□□ 0.06
CLPTM1O96005 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
CLPTM1O96005 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
CLPTM1O96005 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
CLPTM1O96005 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC15.39■□□□□ 0.05
CLPTM1O96005 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CLPTM1O96005 SLC4A7-212ENST00000446700 4000 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
CLPTM1O96005 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
CLPTM1O96005 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
CLPTM1O96005 MYH11-201ENST00000300036 6029 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
CLPTM1O96005 AC138028.2-202ENST00000567968 4528 ntTSL 2 BASIC15.39■□□□□ 0.05
CLPTM1O96005 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
CLPTM1O96005 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
CLPTM1O96005 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC15.39■□□□□ 0.05
CLPTM1O96005 SPATA7-203ENST00000393545 2123 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
CLPTM1O96005 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC15.39■□□□□ 0.05
CLPTM1O96005 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC15.39■□□□□ 0.05
CLPTM1O96005 IGHV3-52-201ENST00000519770 353 ntBASIC15.39■□□□□ 0.05
CLPTM1O96005 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC15.39■□□□□ 0.05
CLPTM1O96005 PNN-202ENST00000553331 656 ntTSL 3 BASIC15.39■□□□□ 0.05
CLPTM1O96005 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC15.39■□□□□ 0.05
CLPTM1O96005 MIR3652-201ENST00000579335 131 ntBASIC15.39■□□□□ 0.05
CLPTM1O96005 CLEC4GP1-201ENST00000596555 870 ntBASIC15.39■□□□□ 0.05
CLPTM1O96005 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
CLPTM1O96005 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CLPTM1O96005 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
CLPTM1O96005 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC15.39■□□□□ 0.05
CLPTM1O96005 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
CLPTM1O96005 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC15.39■□□□□ 0.05
CLPTM1O96005 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC15.39■□□□□ 0.05
CLPTM1O96005 TIFA-201ENST00000361717 4157 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CLPTM1O96005 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC15.39■□□□□ 0.05
CLPTM1O96005 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC15.39■□□□□ 0.05
CLPTM1O96005 CCDC22-201ENST00000376227 2319 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 203.1 ms