Protein–RNA interactions for Protein: A0A539

TCRBV7S3A2, T-cell receptor beta variable 4-2 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV7S3A2A0A539 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC16.5■□□□□ 0.23
TCRBV7S3A2A0A539 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC16.5■□□□□ 0.23
TCRBV7S3A2A0A539 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
TCRBV7S3A2A0A539 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
TCRBV7S3A2A0A539 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
TCRBV7S3A2A0A539 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC16.5■□□□□ 0.23
TCRBV7S3A2A0A539 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
TCRBV7S3A2A0A539 NARF-206ENST00000457415 1668 ntTSL 5 BASIC16.5■□□□□ 0.23
TCRBV7S3A2A0A539 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
TCRBV7S3A2A0A539 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
TCRBV7S3A2A0A539 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
TCRBV7S3A2A0A539 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
TCRBV7S3A2A0A539 GSN-206ENST00000394353 2311 ntTSL 2 BASIC16.5■□□□□ 0.23
TCRBV7S3A2A0A539 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
TCRBV7S3A2A0A539 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
TCRBV7S3A2A0A539 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC16.5■□□□□ 0.23
TCRBV7S3A2A0A539 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
TCRBV7S3A2A0A539 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
TCRBV7S3A2A0A539 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
TCRBV7S3A2A0A539 GPX1P2-201ENST00000429271 606 ntBASIC16.5■□□□□ 0.23
TCRBV7S3A2A0A539 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC16.5■□□□□ 0.23
TCRBV7S3A2A0A539 AL513190.1-201ENST00000621254 727 ntBASIC16.5■□□□□ 0.23
TCRBV7S3A2A0A539 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC16.5■□□□□ 0.23
TCRBV7S3A2A0A539 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC16.5■□□□□ 0.23
TCRBV7S3A2A0A539 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
TCRBV7S3A2A0A539 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
TCRBV7S3A2A0A539 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC16.5■□□□□ 0.23
TCRBV7S3A2A0A539 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
TCRBV7S3A2A0A539 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
TCRBV7S3A2A0A539 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
TCRBV7S3A2A0A539 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC16.5■□□□□ 0.23
TCRBV7S3A2A0A539 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
TCRBV7S3A2A0A539 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC16.5■□□□□ 0.23
TCRBV7S3A2A0A539 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
TCRBV7S3A2A0A539 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC16.5■□□□□ 0.23
TCRBV7S3A2A0A539 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
TCRBV7S3A2A0A539 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
TCRBV7S3A2A0A539 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
TCRBV7S3A2A0A539 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
TCRBV7S3A2A0A539 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
TCRBV7S3A2A0A539 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC16.49■□□□□ 0.23
TCRBV7S3A2A0A539 AC134407.2-201ENST00000625089 1978 ntBASIC16.49■□□□□ 0.23
TCRBV7S3A2A0A539 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
TCRBV7S3A2A0A539 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC16.49■□□□□ 0.23
TCRBV7S3A2A0A539 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
TCRBV7S3A2A0A539 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
TCRBV7S3A2A0A539 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC16.49■□□□□ 0.23
TCRBV7S3A2A0A539 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
TCRBV7S3A2A0A539 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC16.49■□□□□ 0.23
TCRBV7S3A2A0A539 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
TCRBV7S3A2A0A539 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC16.49■□□□□ 0.23
TCRBV7S3A2A0A539 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
TCRBV7S3A2A0A539 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
TCRBV7S3A2A0A539 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
TCRBV7S3A2A0A539 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
TCRBV7S3A2A0A539 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
TCRBV7S3A2A0A539 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
TCRBV7S3A2A0A539 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
TCRBV7S3A2A0A539 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC16.49■□□□□ 0.23
TCRBV7S3A2A0A539 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC16.49■□□□□ 0.23
TCRBV7S3A2A0A539 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC16.49■□□□□ 0.23
TCRBV7S3A2A0A539 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC16.49■□□□□ 0.23
TCRBV7S3A2A0A539 MDH2-205ENST00000461263 648 ntTSL 2 BASIC16.49■□□□□ 0.23
TCRBV7S3A2A0A539 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC16.49■□□□□ 0.23
TCRBV7S3A2A0A539 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC16.49■□□□□ 0.23
TCRBV7S3A2A0A539 AL138918.1-201ENST00000568306 659 ntBASIC16.49■□□□□ 0.23
TCRBV7S3A2A0A539 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC16.49■□□□□ 0.23
TCRBV7S3A2A0A539 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC16.49■□□□□ 0.23
TCRBV7S3A2A0A539 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC16.49■□□□□ 0.23
TCRBV7S3A2A0A539 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC16.49■□□□□ 0.23
TCRBV7S3A2A0A539 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC16.49■□□□□ 0.23
TCRBV7S3A2A0A539 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
TCRBV7S3A2A0A539 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
TCRBV7S3A2A0A539 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
TCRBV7S3A2A0A539 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
TCRBV7S3A2A0A539 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC16.49■□□□□ 0.23
TCRBV7S3A2A0A539 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
TCRBV7S3A2A0A539 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC16.49■□□□□ 0.23
TCRBV7S3A2A0A539 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
TCRBV7S3A2A0A539 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC16.49■□□□□ 0.23
TCRBV7S3A2A0A539 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
TCRBV7S3A2A0A539 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
TCRBV7S3A2A0A539 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC16.48■□□□□ 0.23
TCRBV7S3A2A0A539 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC16.48■□□□□ 0.23
TCRBV7S3A2A0A539 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC16.48■□□□□ 0.23
TCRBV7S3A2A0A539 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC16.48■□□□□ 0.23
TCRBV7S3A2A0A539 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC16.48■□□□□ 0.23
TCRBV7S3A2A0A539 AC020658.6-201ENST00000623564 1870 ntBASIC16.48■□□□□ 0.23
TCRBV7S3A2A0A539 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
TCRBV7S3A2A0A539 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
TCRBV7S3A2A0A539 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
TCRBV7S3A2A0A539 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
TCRBV7S3A2A0A539 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
TCRBV7S3A2A0A539 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC16.48■□□□□ 0.23
TCRBV7S3A2A0A539 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC16.48■□□□□ 0.23
TCRBV7S3A2A0A539 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
TCRBV7S3A2A0A539 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
TCRBV7S3A2A0A539 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
TCRBV7S3A2A0A539 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
TCRBV7S3A2A0A539 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC16.48■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 66.2 ms