Protein–RNA interactions for Protein: Q9Y5B0

CTDP1, RNA polymerase II subunit A C-terminal domain phosphatase, humanhuman

Predicted RBP Predictions only

Length 961 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDP1Q9Y5B0 RELA-227ENST00000615805 2236 ntTSL 5 BASIC18.73■□□□□ 0.59
CTDP1Q9Y5B0 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC18.73■□□□□ 0.59
CTDP1Q9Y5B0 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
CTDP1Q9Y5B0 KRT8P12-202ENST00000472924 1397 ntBASIC18.73■□□□□ 0.59
CTDP1Q9Y5B0 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC18.73■□□□□ 0.59
CTDP1Q9Y5B0 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CTDP1Q9Y5B0 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CTDP1Q9Y5B0 AL139423.1-201ENST00000606802 7923 ntTSL 5 BASIC18.73■□□□□ 0.59
CTDP1Q9Y5B0 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CTDP1Q9Y5B0 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CTDP1Q9Y5B0 OSM-203ENST00000403463 464 ntTSL 3 BASIC18.73■□□□□ 0.59
CTDP1Q9Y5B0 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC18.73■□□□□ 0.59
CTDP1Q9Y5B0 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC18.73■□□□□ 0.59
CTDP1Q9Y5B0 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC18.73■□□□□ 0.59
CTDP1Q9Y5B0 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC18.73■□□□□ 0.59
CTDP1Q9Y5B0 TMPRSS11CP-201ENST00000453277 683 ntBASIC18.73■□□□□ 0.59
CTDP1Q9Y5B0 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
CTDP1Q9Y5B0 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC18.73■□□□□ 0.59
CTDP1Q9Y5B0 PAM16-215ENST00000577031 548 ntTSL 4 BASIC18.73■□□□□ 0.59
CTDP1Q9Y5B0 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC18.73■□□□□ 0.59
CTDP1Q9Y5B0 AC025048.6-201ENST00000634326 1161 ntBASIC18.73■□□□□ 0.59
CTDP1Q9Y5B0 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
CTDP1Q9Y5B0 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC18.73■□□□□ 0.59
CTDP1Q9Y5B0 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC18.73■□□□□ 0.59
CTDP1Q9Y5B0 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC18.73■□□□□ 0.59
CTDP1Q9Y5B0 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
CTDP1Q9Y5B0 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
CTDP1Q9Y5B0 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CTDP1Q9Y5B0 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC18.73■□□□□ 0.59
CTDP1Q9Y5B0 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CTDP1Q9Y5B0 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC18.72■□□□□ 0.59
CTDP1Q9Y5B0 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CTDP1Q9Y5B0 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CTDP1Q9Y5B0 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CTDP1Q9Y5B0 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CTDP1Q9Y5B0 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC18.72■□□□□ 0.59
CTDP1Q9Y5B0 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
CTDP1Q9Y5B0 CALY-202ENST00000368555 783 ntTSL 2 BASIC18.72■□□□□ 0.59
CTDP1Q9Y5B0 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CTDP1Q9Y5B0 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CTDP1Q9Y5B0 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC18.72■□□□□ 0.59
CTDP1Q9Y5B0 RN7SL692P-201ENST00000464677 288 ntBASIC18.72■□□□□ 0.59
CTDP1Q9Y5B0 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC18.72■□□□□ 0.59
CTDP1Q9Y5B0 SPDYE22P-201ENST00000582158 798 ntBASIC18.72■□□□□ 0.59
CTDP1Q9Y5B0 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC18.72■□□□□ 0.59
CTDP1Q9Y5B0 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CTDP1Q9Y5B0 AC004840.1-201ENST00000636359 365 ntBASIC18.72■□□□□ 0.59
CTDP1Q9Y5B0 AL033527.5-202ENST00000641632 1098 ntBASIC18.72■□□□□ 0.59
CTDP1Q9Y5B0 DIP2A-201ENST00000400274 7023 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
CTDP1Q9Y5B0 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
CTDP1Q9Y5B0 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
CTDP1Q9Y5B0 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CTDP1Q9Y5B0 CUL3-202ENST00000344951 6592 ntTSL 2 BASIC18.72■□□□□ 0.59
CTDP1Q9Y5B0 AC012313.1-201ENST00000593393 3059 ntBASIC18.72■□□□□ 0.59
CTDP1Q9Y5B0 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CTDP1Q9Y5B0 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CTDP1Q9Y5B0 SERTAD4-201ENST00000367012 5219 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CTDP1Q9Y5B0 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC18.72■□□□□ 0.59
CTDP1Q9Y5B0 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CTDP1Q9Y5B0 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC18.71■□□□□ 0.59
CTDP1Q9Y5B0 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
CTDP1Q9Y5B0 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC18.71■□□□□ 0.59
CTDP1Q9Y5B0 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC18.71■□□□□ 0.59
CTDP1Q9Y5B0 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC18.71■□□□□ 0.59
CTDP1Q9Y5B0 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CTDP1Q9Y5B0 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
CTDP1Q9Y5B0 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC18.71■□□□□ 0.59
CTDP1Q9Y5B0 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC18.71■□□□□ 0.59
CTDP1Q9Y5B0 GTF2IRD1-205ENST00000476977 5868 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CTDP1Q9Y5B0 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
CTDP1Q9Y5B0 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CTDP1Q9Y5B0 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CTDP1Q9Y5B0 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
CTDP1Q9Y5B0 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CTDP1Q9Y5B0 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CTDP1Q9Y5B0 AL353779.1-201ENST00000434793 351 ntBASIC18.71■□□□□ 0.59
CTDP1Q9Y5B0 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC18.71■□□□□ 0.59
CTDP1Q9Y5B0 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CTDP1Q9Y5B0 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC18.71■□□□□ 0.59
CTDP1Q9Y5B0 CCDC74BP1-201ENST00000508880 1123 ntBASIC18.71■□□□□ 0.59
CTDP1Q9Y5B0 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC18.71■□□□□ 0.59
CTDP1Q9Y5B0 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CTDP1Q9Y5B0 AL512361.1-201ENST00000554200 418 ntBASIC18.71■□□□□ 0.59
CTDP1Q9Y5B0 AC044860.1-202ENST00000559481 777 ntBASIC18.71■□□□□ 0.59
CTDP1Q9Y5B0 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CTDP1Q9Y5B0 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CTDP1Q9Y5B0 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CTDP1Q9Y5B0 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
CTDP1Q9Y5B0 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC18.71■□□□□ 0.59
CTDP1Q9Y5B0 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CTDP1Q9Y5B0 CPEB2-205ENST00000442003 6797 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
CTDP1Q9Y5B0 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
CTDP1Q9Y5B0 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC18.71■□□□□ 0.59
CTDP1Q9Y5B0 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
CTDP1Q9Y5B0 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
CTDP1Q9Y5B0 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
CTDP1Q9Y5B0 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CTDP1Q9Y5B0 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CTDP1Q9Y5B0 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CTDP1Q9Y5B0 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms