Protein–RNA interactions for Protein: Q9UIU6

SIX4, Homeobox protein SIX4, humanhuman

Predictions only

Length 781 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4Q9UIU6 AL603832.2-201ENST00000566195 2125 ntBASIC17.28■□□□□ 0.36
SIX4Q9UIU6 PRR29-209ENST00000582540 967 ntTSL 2 BASIC17.28■□□□□ 0.36
SIX4Q9UIU6 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
SIX4Q9UIU6 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC17.28■□□□□ 0.36
SIX4Q9UIU6 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC17.28■□□□□ 0.36
SIX4Q9UIU6 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC17.28■□□□□ 0.36
SIX4Q9UIU6 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SIX4Q9UIU6 AC024909.3-201ENST00000611513 2257 ntBASIC17.28■□□□□ 0.36
SIX4Q9UIU6 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC17.28■□□□□ 0.36
SIX4Q9UIU6 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SIX4Q9UIU6 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SIX4Q9UIU6 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
SIX4Q9UIU6 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC17.28■□□□□ 0.36
SIX4Q9UIU6 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
SIX4Q9UIU6 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SIX4Q9UIU6 LINC02199-201ENST00000506655 2702 ntBASIC17.27■□□□□ 0.36
SIX4Q9UIU6 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
SIX4Q9UIU6 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
SIX4Q9UIU6 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
SIX4Q9UIU6 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
SIX4Q9UIU6 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
SIX4Q9UIU6 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC17.27■□□□□ 0.36
SIX4Q9UIU6 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
SIX4Q9UIU6 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
SIX4Q9UIU6 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
SIX4Q9UIU6 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
SIX4Q9UIU6 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC17.27■□□□□ 0.36
SIX4Q9UIU6 CENPM-206ENST00000407253 818 ntTSL 2 BASIC17.27■□□□□ 0.36
SIX4Q9UIU6 BASP1P1-201ENST00000430708 665 ntBASIC17.27■□□□□ 0.36
SIX4Q9UIU6 BCRP1-201ENST00000444246 691 ntBASIC17.27■□□□□ 0.36
SIX4Q9UIU6 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC17.27■□□□□ 0.36
SIX4Q9UIU6 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
SIX4Q9UIU6 SPCS2P1-201ENST00000561636 679 ntBASIC17.27■□□□□ 0.36
SIX4Q9UIU6 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC17.27■□□□□ 0.36
SIX4Q9UIU6 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC17.27■□□□□ 0.36
SIX4Q9UIU6 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC17.27■□□□□ 0.36
SIX4Q9UIU6 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
SIX4Q9UIU6 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
SIX4Q9UIU6 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
SIX4Q9UIU6 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC17.27■□□□□ 0.35
SIX4Q9UIU6 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
SIX4Q9UIU6 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC17.27■□□□□ 0.35
SIX4Q9UIU6 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.35
SIX4Q9UIU6 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
SIX4Q9UIU6 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.35
SIX4Q9UIU6 CDC14C-201ENST00000428251 1719 ntBASIC17.27■□□□□ 0.35
SIX4Q9UIU6 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
SIX4Q9UIU6 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
SIX4Q9UIU6 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
SIX4Q9UIU6 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
SIX4Q9UIU6 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC17.26■□□□□ 0.35
SIX4Q9UIU6 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SIX4Q9UIU6 AC087499.5-201ENST00000452760 1342 ntBASIC17.26■□□□□ 0.35
SIX4Q9UIU6 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
SIX4Q9UIU6 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
SIX4Q9UIU6 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SIX4Q9UIU6 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC17.26■□□□□ 0.35
SIX4Q9UIU6 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
SIX4Q9UIU6 HNRNPA3P1-201ENST00000401429 1139 ntBASIC17.26■□□□□ 0.35
SIX4Q9UIU6 MRPS18AP1-201ENST00000414458 589 ntBASIC17.26■□□□□ 0.35
SIX4Q9UIU6 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC17.26■□□□□ 0.35
SIX4Q9UIU6 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC17.26■□□□□ 0.35
SIX4Q9UIU6 AC009477.1-201ENST00000452936 217 ntBASIC17.26■□□□□ 0.35
SIX4Q9UIU6 UGT1A2P-201ENST00000454886 866 ntBASIC17.26■□□□□ 0.35
SIX4Q9UIU6 HNRNPA3P5-201ENST00000455201 833 ntBASIC17.26■□□□□ 0.35
SIX4Q9UIU6 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC17.26■□□□□ 0.35
SIX4Q9UIU6 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC17.26■□□□□ 0.35
SIX4Q9UIU6 AC010336.2-201ENST00000564226 506 ntBASIC17.26■□□□□ 0.35
SIX4Q9UIU6 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC17.26■□□□□ 0.35
SIX4Q9UIU6 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
SIX4Q9UIU6 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC17.26■□□□□ 0.35
SIX4Q9UIU6 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
SIX4Q9UIU6 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SIX4Q9UIU6 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
SIX4Q9UIU6 DOC2GP-204ENST00000639052 2548 ntBASIC17.26■□□□□ 0.35
SIX4Q9UIU6 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
SIX4Q9UIU6 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC17.26■□□□□ 0.35
SIX4Q9UIU6 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SIX4Q9UIU6 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SIX4Q9UIU6 AC026691.1-201ENST00000602502 2017 ntBASIC17.26■□□□□ 0.35
SIX4Q9UIU6 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
SIX4Q9UIU6 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
SIX4Q9UIU6 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SIX4Q9UIU6 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SIX4Q9UIU6 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SIX4Q9UIU6 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC17.25■□□□□ 0.35
SIX4Q9UIU6 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
SIX4Q9UIU6 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SIX4Q9UIU6 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC17.25■□□□□ 0.35
SIX4Q9UIU6 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
SIX4Q9UIU6 KRT8P37-201ENST00000451609 1420 ntBASIC17.25■□□□□ 0.35
SIX4Q9UIU6 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SIX4Q9UIU6 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
SIX4Q9UIU6 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SIX4Q9UIU6 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SIX4Q9UIU6 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC17.25■□□□□ 0.35
SIX4Q9UIU6 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
SIX4Q9UIU6 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC17.25■□□□□ 0.35
SIX4Q9UIU6 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC17.25■□□□□ 0.35
SIX4Q9UIU6 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 37.6 ms