Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
LHX3Q9UBR4 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LHX3Q9UBR4 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC16.29■□□□□ 0.2
LHX3Q9UBR4 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
LHX3Q9UBR4 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LHX3Q9UBR4 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC16.29■□□□□ 0.2
LHX3Q9UBR4 AC241585.1-201ENST00000433527 519 ntBASIC16.29■□□□□ 0.2
LHX3Q9UBR4 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC16.29■□□□□ 0.2
LHX3Q9UBR4 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC16.29■□□□□ 0.2
LHX3Q9UBR4 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
LHX3Q9UBR4 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC16.29■□□□□ 0.2
LHX3Q9UBR4 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
LHX3Q9UBR4 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC16.29■□□□□ 0.2
LHX3Q9UBR4 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
LHX3Q9UBR4 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
LHX3Q9UBR4 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
LHX3Q9UBR4 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
LHX3Q9UBR4 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LHX3Q9UBR4 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
LHX3Q9UBR4 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC16.29■□□□□ 0.2
LHX3Q9UBR4 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
LHX3Q9UBR4 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
LHX3Q9UBR4 OR6D1P-203ENST00000641209 4860 ntBASIC16.29■□□□□ 0.2
LHX3Q9UBR4 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LHX3Q9UBR4 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
LHX3Q9UBR4 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
LHX3Q9UBR4 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC16.29■□□□□ 0.2
LHX3Q9UBR4 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
LHX3Q9UBR4 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LHX3Q9UBR4 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
LHX3Q9UBR4 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC16.28■□□□□ 0.2
LHX3Q9UBR4 AC069224.1-201ENST00000566372 1715 ntBASIC16.28■□□□□ 0.2
LHX3Q9UBR4 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC16.28■□□□□ 0.2
LHX3Q9UBR4 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LHX3Q9UBR4 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LHX3Q9UBR4 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LHX3Q9UBR4 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LHX3Q9UBR4 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
LHX3Q9UBR4 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC16.28■□□□□ 0.2
LHX3Q9UBR4 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LHX3Q9UBR4 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
LHX3Q9UBR4 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LHX3Q9UBR4 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LHX3Q9UBR4 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LHX3Q9UBR4 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
LHX3Q9UBR4 SYS1-203ENST00000414310 795 ntTSL 3 BASIC16.28■□□□□ 0.2
LHX3Q9UBR4 HIST3H2BA-201ENST00000436555 524 ntBASIC16.28■□□□□ 0.2
LHX3Q9UBR4 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC16.28■□□□□ 0.2
LHX3Q9UBR4 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC16.28■□□□□ 0.2
LHX3Q9UBR4 AQP6-203ENST00000551733 849 ntTSL 3 BASIC16.28■□□□□ 0.2
LHX3Q9UBR4 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC16.28■□□□□ 0.2
LHX3Q9UBR4 MPI-209ENST00000564003 1195 ntTSL 2 BASIC16.28■□□□□ 0.2
LHX3Q9UBR4 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC16.28■□□□□ 0.2
LHX3Q9UBR4 AL844908.2-201ENST00000609461 460 ntBASIC16.28■□□□□ 0.2
LHX3Q9UBR4 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
LHX3Q9UBR4 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LHX3Q9UBR4 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
LHX3Q9UBR4 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
LHX3Q9UBR4 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LHX3Q9UBR4 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LHX3Q9UBR4 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LHX3Q9UBR4 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LHX3Q9UBR4 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC16.28■□□□□ 0.2
LHX3Q9UBR4 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
LHX3Q9UBR4 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LHX3Q9UBR4 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
LHX3Q9UBR4 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC16.27■□□□□ 0.2
LHX3Q9UBR4 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC16.27■□□□□ 0.2
LHX3Q9UBR4 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
LHX3Q9UBR4 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
LHX3Q9UBR4 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
LHX3Q9UBR4 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC16.27■□□□□ 0.2
LHX3Q9UBR4 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
LHX3Q9UBR4 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
LHX3Q9UBR4 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
LHX3Q9UBR4 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC16.27■□□□□ 0.2
LHX3Q9UBR4 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC16.27■□□□□ 0.2
LHX3Q9UBR4 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
LHX3Q9UBR4 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC16.27■□□□□ 0.2
LHX3Q9UBR4 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
LHX3Q9UBR4 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
LHX3Q9UBR4 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC16.27■□□□□ 0.2
LHX3Q9UBR4 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
LHX3Q9UBR4 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
LHX3Q9UBR4 HNRNPA3P1-201ENST00000401429 1139 ntBASIC16.27■□□□□ 0.2
LHX3Q9UBR4 CENPM-206ENST00000407253 818 ntTSL 2 BASIC16.27■□□□□ 0.2
LHX3Q9UBR4 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC16.27■□□□□ 0.2
LHX3Q9UBR4 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC16.27■□□□□ 0.2
LHX3Q9UBR4 BASP1P1-201ENST00000430708 665 ntBASIC16.27■□□□□ 0.2
LHX3Q9UBR4 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
LHX3Q9UBR4 HNRNPA3P5-201ENST00000455201 833 ntBASIC16.27■□□□□ 0.2
LHX3Q9UBR4 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC16.27■□□□□ 0.2
LHX3Q9UBR4 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC16.27■□□□□ 0.2
LHX3Q9UBR4 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC16.27■□□□□ 0.2
LHX3Q9UBR4 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
LHX3Q9UBR4 AL512361.1-201ENST00000554200 418 ntBASIC16.27■□□□□ 0.2
LHX3Q9UBR4 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC16.27■□□□□ 0.2
LHX3Q9UBR4 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
LHX3Q9UBR4 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
LHX3Q9UBR4 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 41.9 ms