Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 AC109635.5-201ENST00000533593 962 ntBASIC16.8■□□□□ 0.28
PCDH9Q9HC56 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
PCDH9Q9HC56 AP002472.1-201ENST00000577490 586 ntBASIC16.8■□□□□ 0.28
PCDH9Q9HC56 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC16.8■□□□□ 0.28
PCDH9Q9HC56 AC016027.1-202ENST00000607927 1699 ntBASIC16.8■□□□□ 0.28
PCDH9Q9HC56 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC16.8■□□□□ 0.28
PCDH9Q9HC56 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC16.8■□□□□ 0.28
PCDH9Q9HC56 AMT-233ENST00000636522 1620 ntTSL 2 BASIC16.8■□□□□ 0.28
PCDH9Q9HC56 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC16.8■□□□□ 0.28
PCDH9Q9HC56 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
PCDH9Q9HC56 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
PCDH9Q9HC56 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
PCDH9Q9HC56 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
PCDH9Q9HC56 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
PCDH9Q9HC56 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PCDH9Q9HC56 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC16.79■□□□□ 0.28
PCDH9Q9HC56 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PCDH9Q9HC56 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PCDH9Q9HC56 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC16.79■□□□□ 0.28
PCDH9Q9HC56 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
PCDH9Q9HC56 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
PCDH9Q9HC56 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PCDH9Q9HC56 FES-204ENST00000414248 2327 ntTSL 2 BASIC16.79■□□□□ 0.28
PCDH9Q9HC56 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PCDH9Q9HC56 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
PCDH9Q9HC56 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC16.79■□□□□ 0.28
PCDH9Q9HC56 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC16.79■□□□□ 0.28
PCDH9Q9HC56 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC16.79■□□□□ 0.28
PCDH9Q9HC56 FIS1-203ENST00000442303 631 ntTSL 3 BASIC16.79■□□□□ 0.28
PCDH9Q9HC56 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC16.79■□□□□ 0.28
PCDH9Q9HC56 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
PCDH9Q9HC56 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC16.79■□□□□ 0.28
PCDH9Q9HC56 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC16.79■□□□□ 0.28
PCDH9Q9HC56 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC16.79■□□□□ 0.28
PCDH9Q9HC56 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC16.79■□□□□ 0.28
PCDH9Q9HC56 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PCDH9Q9HC56 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
PCDH9Q9HC56 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC16.79■□□□□ 0.28
PCDH9Q9HC56 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC16.79■□□□□ 0.28
PCDH9Q9HC56 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC16.79■□□□□ 0.28
PCDH9Q9HC56 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
PCDH9Q9HC56 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PCDH9Q9HC56 HYMAI-201ENST00000635591 3347 ntBASIC16.79■□□□□ 0.28
PCDH9Q9HC56 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC16.79■□□□□ 0.28
PCDH9Q9HC56 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PCDH9Q9HC56 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC16.79■□□□□ 0.28
PCDH9Q9HC56 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
PCDH9Q9HC56 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC16.79■□□□□ 0.28
PCDH9Q9HC56 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PCDH9Q9HC56 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
PCDH9Q9HC56 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
PCDH9Q9HC56 RELA-227ENST00000615805 2236 ntTSL 5 BASIC16.78■□□□□ 0.28
PCDH9Q9HC56 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
PCDH9Q9HC56 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
PCDH9Q9HC56 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
PCDH9Q9HC56 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PCDH9Q9HC56 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC16.78■□□□□ 0.28
PCDH9Q9HC56 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
PCDH9Q9HC56 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
PCDH9Q9HC56 AC093724.1-201ENST00000448659 1027 ntBASIC16.78■□□□□ 0.28
PCDH9Q9HC56 AC112191.1-201ENST00000523689 701 ntBASIC16.78■□□□□ 0.28
PCDH9Q9HC56 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
PCDH9Q9HC56 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PCDH9Q9HC56 MTDHP5-201ENST00000598980 586 ntBASIC16.78■□□□□ 0.28
PCDH9Q9HC56 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC16.78■□□□□ 0.28
PCDH9Q9HC56 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
PCDH9Q9HC56 FER1L4-210ENST00000615531 5998 ntBASIC16.78■□□□□ 0.28
PCDH9Q9HC56 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PCDH9Q9HC56 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
PCDH9Q9HC56 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC16.78■□□□□ 0.28
PCDH9Q9HC56 AC022532.1-201ENST00000624563 1728 ntBASIC16.78■□□□□ 0.28
PCDH9Q9HC56 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PCDH9Q9HC56 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC16.78■□□□□ 0.28
PCDH9Q9HC56 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
PCDH9Q9HC56 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
PCDH9Q9HC56 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
PCDH9Q9HC56 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
PCDH9Q9HC56 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC16.78■□□□□ 0.28
PCDH9Q9HC56 AC103702.1-201ENST00000548801 2630 ntBASIC16.78■□□□□ 0.28
PCDH9Q9HC56 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
PCDH9Q9HC56 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PCDH9Q9HC56 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PCDH9Q9HC56 PRAL-201ENST00000624952 3286 ntBASIC16.78■□□□□ 0.28
PCDH9Q9HC56 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
PCDH9Q9HC56 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.28
PCDH9Q9HC56 WARS-232ENST00000556645 2508 ntTSL 5 BASIC16.77■□□□□ 0.28
PCDH9Q9HC56 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC16.77■□□□□ 0.28
PCDH9Q9HC56 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
PCDH9Q9HC56 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
PCDH9Q9HC56 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
PCDH9Q9HC56 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
PCDH9Q9HC56 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC16.77■□□□□ 0.28
PCDH9Q9HC56 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
PCDH9Q9HC56 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.28
PCDH9Q9HC56 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
PCDH9Q9HC56 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
PCDH9Q9HC56 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
PCDH9Q9HC56 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
PCDH9Q9HC56 AC002056.1-201ENST00000395613 760 ntBASIC16.77■□□□□ 0.28
PCDH9Q9HC56 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC16.77■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 61.4 ms