Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC14.26□□□□□ -0.13
NKX3-1Q99801 KCNQ4-201ENST00000347132 4099 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
NKX3-1Q99801 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC14.25□□□□□ -0.13
NKX3-1Q99801 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC14.25□□□□□ -0.13
NKX3-1Q99801 PHF14-215ENST00000634607 3407 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
NKX3-1Q99801 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
NKX3-1Q99801 ZNF212-201ENST00000335870 2810 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
NKX3-1Q99801 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC14.25□□□□□ -0.13
NKX3-1Q99801 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC14.25□□□□□ -0.13
NKX3-1Q99801 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
NKX3-1Q99801 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC14.25□□□□□ -0.13
NKX3-1Q99801 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
NKX3-1Q99801 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
NKX3-1Q99801 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC14.25□□□□□ -0.13
NKX3-1Q99801 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
NKX3-1Q99801 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC14.25□□□□□ -0.13
NKX3-1Q99801 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC14.25□□□□□ -0.13
NKX3-1Q99801 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
NKX3-1Q99801 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC14.25□□□□□ -0.13
NKX3-1Q99801 CAMK1D-204ENST00000619168 8153 ntAPPRIS P4 TSL 1 (best) BASIC14.25□□□□□ -0.13
NKX3-1Q99801 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
NKX3-1Q99801 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC14.25□□□□□ -0.13
NKX3-1Q99801 AKR1C7P-201ENST00000305623 895 ntBASIC14.25□□□□□ -0.13
NKX3-1Q99801 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
NKX3-1Q99801 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
NKX3-1Q99801 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC14.25□□□□□ -0.13
NKX3-1Q99801 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
NKX3-1Q99801 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
NKX3-1Q99801 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC14.25□□□□□ -0.13
NKX3-1Q99801 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
NKX3-1Q99801 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC14.25□□□□□ -0.13
NKX3-1Q99801 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC14.25□□□□□ -0.13
NKX3-1Q99801 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC14.25□□□□□ -0.13
NKX3-1Q99801 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
NKX3-1Q99801 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC14.25□□□□□ -0.13
NKX3-1Q99801 AC021087.4-201ENST00000563761 564 ntBASIC14.25□□□□□ -0.13
NKX3-1Q99801 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC14.25□□□□□ -0.13
NKX3-1Q99801 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC14.25□□□□□ -0.13
NKX3-1Q99801 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC14.25□□□□□ -0.13
NKX3-1Q99801 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC14.25□□□□□ -0.13
NKX3-1Q99801 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC14.25□□□□□ -0.13
NKX3-1Q99801 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
NKX3-1Q99801 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
NKX3-1Q99801 PPT1-215ENST00000641471 2368 ntBASIC14.25□□□□□ -0.13
NKX3-1Q99801 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
NKX3-1Q99801 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC14.25□□□□□ -0.13
NKX3-1Q99801 NACC2-201ENST00000277554 6899 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
NKX3-1Q99801 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
NKX3-1Q99801 PAQR8-202ENST00000442253 4738 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
NKX3-1Q99801 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
NKX3-1Q99801 PSMG3-AS1-201ENST00000437621 5701 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
NKX3-1Q99801 SLC24A3-201ENST00000328041 3929 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
NKX3-1Q99801 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
NKX3-1Q99801 BCAR1-204ENST00000418647 3387 ntAPPRIS ALT2 TSL 2 BASIC14.24□□□□□ -0.13
NKX3-1Q99801 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC14.24□□□□□ -0.13
NKX3-1Q99801 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC14.24□□□□□ -0.13
NKX3-1Q99801 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC14.24□□□□□ -0.13
NKX3-1Q99801 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC14.24□□□□□ -0.13
NKX3-1Q99801 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
NKX3-1Q99801 OR4D1-202ENST00000641449 4925 ntAPPRIS P1 BASIC14.24□□□□□ -0.13
NKX3-1Q99801 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
NKX3-1Q99801 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
NKX3-1Q99801 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
NKX3-1Q99801 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
NKX3-1Q99801 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
NKX3-1Q99801 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
NKX3-1Q99801 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC14.24□□□□□ -0.13
NKX3-1Q99801 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
NKX3-1Q99801 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
NKX3-1Q99801 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
NKX3-1Q99801 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC14.24□□□□□ -0.13
NKX3-1Q99801 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
NKX3-1Q99801 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
NKX3-1Q99801 CDK2AP2P3-201ENST00000422476 372 ntBASIC14.24□□□□□ -0.13
NKX3-1Q99801 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
NKX3-1Q99801 ARTN-206ENST00000472435 402 ntTSL 3 BASIC14.24□□□□□ -0.13
NKX3-1Q99801 MSRA-206ENST00000521209 814 ntTSL 3 BASIC14.24□□□□□ -0.13
NKX3-1Q99801 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC14.24□□□□□ -0.13
NKX3-1Q99801 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC14.24□□□□□ -0.13
NKX3-1Q99801 AL121912.1-201ENST00000603683 238 ntBASIC14.24□□□□□ -0.13
NKX3-1Q99801 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC14.24□□□□□ -0.13
NKX3-1Q99801 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC14.24□□□□□ -0.13
NKX3-1Q99801 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC14.24□□□□□ -0.13
NKX3-1Q99801 SAP130-201ENST00000259234 4140 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
NKX3-1Q99801 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC14.24□□□□□ -0.13
NKX3-1Q99801 OPA1-201ENST00000361150 6330 ntTSL 5 BASIC14.24□□□□□ -0.13
NKX3-1Q99801 ROBO1-209ENST00000495273 5600 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
NKX3-1Q99801 AGPS-201ENST00000264167 7764 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
NKX3-1Q99801 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC14.24□□□□□ -0.13
NKX3-1Q99801 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
NKX3-1Q99801 EPB41L3-206ENST00000544123 3972 ntAPPRIS ALT2 TSL 2 BASIC14.24□□□□□ -0.13
NKX3-1Q99801 SRPK1-204ENST00000373825 4592 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
NKX3-1Q99801 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC14.24□□□□□ -0.13
NKX3-1Q99801 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC14.24□□□□□ -0.13
NKX3-1Q99801 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC14.24□□□□□ -0.13
NKX3-1Q99801 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
NKX3-1Q99801 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
NKX3-1Q99801 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
NKX3-1Q99801 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
NKX3-1Q99801 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 60.7 ms