Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC16.88■□□□□ 0.29
ATG4AQ8WYN0 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC16.88■□□□□ 0.29
ATG4AQ8WYN0 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
ATG4AQ8WYN0 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
ATG4AQ8WYN0 TBC1D25-201ENST00000376771 4042 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
ATG4AQ8WYN0 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
ATG4AQ8WYN0 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC16.87■□□□□ 0.29
ATG4AQ8WYN0 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC16.87■□□□□ 0.29
ATG4AQ8WYN0 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
ATG4AQ8WYN0 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
ATG4AQ8WYN0 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
ATG4AQ8WYN0 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
ATG4AQ8WYN0 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC16.87■□□□□ 0.29
ATG4AQ8WYN0 AC004870.1-201ENST00000315132 882 ntBASIC16.87■□□□□ 0.29
ATG4AQ8WYN0 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC16.87■□□□□ 0.29
ATG4AQ8WYN0 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC16.87■□□□□ 0.29
ATG4AQ8WYN0 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
ATG4AQ8WYN0 RNA5SP415-201ENST00000517246 115 ntBASIC16.87■□□□□ 0.29
ATG4AQ8WYN0 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
ATG4AQ8WYN0 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
ATG4AQ8WYN0 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
ATG4AQ8WYN0 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC16.87■□□□□ 0.29
ATG4AQ8WYN0 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC16.87■□□□□ 0.29
ATG4AQ8WYN0 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC16.87■□□□□ 0.29
ATG4AQ8WYN0 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
ATG4AQ8WYN0 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
ATG4AQ8WYN0 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
ATG4AQ8WYN0 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
ATG4AQ8WYN0 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC16.87■□□□□ 0.29
ATG4AQ8WYN0 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC16.87■□□□□ 0.29
ATG4AQ8WYN0 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC16.87■□□□□ 0.29
ATG4AQ8WYN0 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
ATG4AQ8WYN0 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
ATG4AQ8WYN0 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
ATG4AQ8WYN0 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
ATG4AQ8WYN0 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
ATG4AQ8WYN0 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
ATG4AQ8WYN0 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
ATG4AQ8WYN0 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
ATG4AQ8WYN0 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
ATG4AQ8WYN0 CICP13-201ENST00000422015 2789 ntBASIC16.86■□□□□ 0.29
ATG4AQ8WYN0 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
ATG4AQ8WYN0 AC068418.2-201ENST00000577309 3703 ntBASIC16.86■□□□□ 0.29
ATG4AQ8WYN0 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
ATG4AQ8WYN0 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
ATG4AQ8WYN0 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC16.86■□□□□ 0.29
ATG4AQ8WYN0 CRYGEP-201ENST00000412192 528 ntBASIC16.86■□□□□ 0.29
ATG4AQ8WYN0 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC16.86■□□□□ 0.29
ATG4AQ8WYN0 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC16.86■□□□□ 0.29
ATG4AQ8WYN0 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
ATG4AQ8WYN0 LITAF-211ENST00000572255 516 ntTSL 4 BASIC16.86■□□□□ 0.29
ATG4AQ8WYN0 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC16.86■□□□□ 0.29
ATG4AQ8WYN0 AL009183.1-201ENST00000603760 355 ntBASIC16.86■□□□□ 0.29
ATG4AQ8WYN0 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
ATG4AQ8WYN0 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
ATG4AQ8WYN0 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
ATG4AQ8WYN0 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
ATG4AQ8WYN0 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
ATG4AQ8WYN0 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC16.86■□□□□ 0.29
ATG4AQ8WYN0 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
ATG4AQ8WYN0 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
ATG4AQ8WYN0 F11R-206ENST00000621309 4770 ntTSL 5 BASIC16.86■□□□□ 0.29
ATG4AQ8WYN0 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
ATG4AQ8WYN0 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
ATG4AQ8WYN0 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
ATG4AQ8WYN0 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
ATG4AQ8WYN0 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
ATG4AQ8WYN0 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC16.85■□□□□ 0.29
ATG4AQ8WYN0 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
ATG4AQ8WYN0 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
ATG4AQ8WYN0 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
ATG4AQ8WYN0 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
ATG4AQ8WYN0 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
ATG4AQ8WYN0 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
ATG4AQ8WYN0 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
ATG4AQ8WYN0 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC16.85■□□□□ 0.29
ATG4AQ8WYN0 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
ATG4AQ8WYN0 METTL26-205ENST00000397666 726 ntTSL 2 BASIC16.85■□□□□ 0.29
ATG4AQ8WYN0 IGHV3-22-201ENST00000520721 359 ntBASIC16.85■□□□□ 0.29
ATG4AQ8WYN0 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC16.85■□□□□ 0.29
ATG4AQ8WYN0 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
ATG4AQ8WYN0 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC16.85■□□□□ 0.29
ATG4AQ8WYN0 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC16.85■□□□□ 0.29
ATG4AQ8WYN0 CD7-202ENST00000578509 925 ntTSL 3 BASIC16.85■□□□□ 0.29
ATG4AQ8WYN0 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC16.85■□□□□ 0.29
ATG4AQ8WYN0 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC16.85■□□□□ 0.29
ATG4AQ8WYN0 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
ATG4AQ8WYN0 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
ATG4AQ8WYN0 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC16.85■□□□□ 0.29
ATG4AQ8WYN0 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC16.85■□□□□ 0.29
ATG4AQ8WYN0 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
ATG4AQ8WYN0 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC16.85■□□□□ 0.29
ATG4AQ8WYN0 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
ATG4AQ8WYN0 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
ATG4AQ8WYN0 SERTAD4-201ENST00000367012 5219 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
ATG4AQ8WYN0 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC16.85■□□□□ 0.29
ATG4AQ8WYN0 AC136621.1-201ENST00000624017 2304 ntBASIC16.85■□□□□ 0.29
ATG4AQ8WYN0 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
ATG4AQ8WYN0 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC16.85■□□□□ 0.29
ATG4AQ8WYN0 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms