Protein–RNA interactions for Protein: Q8N205

SYNE4, Nesprin-4, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4Q8N205 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
SYNE4Q8N205 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
SYNE4Q8N205 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SYNE4Q8N205 CLK3P2-201ENST00000427566 1453 ntBASIC20.04■□□□□ 0.8
SYNE4Q8N205 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC20.04■□□□□ 0.8
SYNE4Q8N205 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SYNE4Q8N205 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
SYNE4Q8N205 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
SYNE4Q8N205 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
SYNE4Q8N205 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
SYNE4Q8N205 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SYNE4Q8N205 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC20.03■□□□□ 0.8
SYNE4Q8N205 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC20.03■□□□□ 0.8
SYNE4Q8N205 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SYNE4Q8N205 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC20.03■□□□□ 0.8
SYNE4Q8N205 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC20.03■□□□□ 0.8
SYNE4Q8N205 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
SYNE4Q8N205 FAM86MP-201ENST00000340703 885 ntBASIC20.03■□□□□ 0.8
SYNE4Q8N205 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
SYNE4Q8N205 AC004987.2-201ENST00000395959 1148 ntBASIC20.03■□□□□ 0.8
SYNE4Q8N205 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC20.03■□□□□ 0.8
SYNE4Q8N205 HIST1H2BPS3-201ENST00000419683 341 ntBASIC20.03■□□□□ 0.8
SYNE4Q8N205 RPL13P2-201ENST00000440687 659 ntBASIC20.03■□□□□ 0.8
SYNE4Q8N205 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC20.03■□□□□ 0.8
SYNE4Q8N205 EEF1DP4-201ENST00000446006 880 ntBASIC20.03■□□□□ 0.8
SYNE4Q8N205 AC007389.4-201ENST00000454674 793 ntBASIC20.03■□□□□ 0.8
SYNE4Q8N205 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC20.03■□□□□ 0.8
SYNE4Q8N205 PACS1-203ENST00000524815 628 ntTSL 4 BASIC20.03■□□□□ 0.8
SYNE4Q8N205 AC008115.1-201ENST00000542291 150 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
SYNE4Q8N205 TIMM17BP1-201ENST00000545713 516 ntBASIC20.03■□□□□ 0.8
SYNE4Q8N205 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
SYNE4Q8N205 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
SYNE4Q8N205 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
SYNE4Q8N205 TMEM261P1-201ENST00000604899 340 ntBASIC20.03■□□□□ 0.8
SYNE4Q8N205 AC133552.6-201ENST00000613406 534 ntBASIC20.03■□□□□ 0.8
SYNE4Q8N205 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC20.03■□□□□ 0.8
SYNE4Q8N205 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC20.03■□□□□ 0.8
SYNE4Q8N205 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC20.03■□□□□ 0.8
SYNE4Q8N205 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SYNE4Q8N205 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC20.03■□□□□ 0.8
SYNE4Q8N205 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
SYNE4Q8N205 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SYNE4Q8N205 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC20.03■□□□□ 0.8
SYNE4Q8N205 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
SYNE4Q8N205 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC20.03■□□□□ 0.8
SYNE4Q8N205 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC20.03■□□□□ 0.8
SYNE4Q8N205 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC20.03■□□□□ 0.8
SYNE4Q8N205 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
SYNE4Q8N205 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
SYNE4Q8N205 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC20.03■□□□□ 0.8
SYNE4Q8N205 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
SYNE4Q8N205 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC20.03■□□□□ 0.8
SYNE4Q8N205 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC20.02■□□□□ 0.8
SYNE4Q8N205 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC20.02■□□□□ 0.8
SYNE4Q8N205 GRN-214ENST00000589265 1632 ntTSL 5 BASIC20.02■□□□□ 0.8
SYNE4Q8N205 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
SYNE4Q8N205 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC20.02■□□□□ 0.8
SYNE4Q8N205 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
SYNE4Q8N205 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
SYNE4Q8N205 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC20.02■□□□□ 0.8
SYNE4Q8N205 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC20.02■□□□□ 0.8
SYNE4Q8N205 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SYNE4Q8N205 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
SYNE4Q8N205 TARDBPP1-201ENST00000442013 1203 ntBASIC20.02■□□□□ 0.8
SYNE4Q8N205 FAM25G-201ENST00000452267 345 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SYNE4Q8N205 RHOA-206ENST00000454011 889 ntTSL 2 BASIC20.02■□□□□ 0.8
SYNE4Q8N205 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC20.02■□□□□ 0.8
SYNE4Q8N205 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC20.02■□□□□ 0.8
SYNE4Q8N205 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
SYNE4Q8N205 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC20.02■□□□□ 0.8
SYNE4Q8N205 ORC6-206ENST00000568364 888 ntTSL 5 BASIC20.02■□□□□ 0.8
SYNE4Q8N205 SNX12-206ENST00000622259 661 ntTSL 5 BASIC20.02■□□□□ 0.8
SYNE4Q8N205 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
SYNE4Q8N205 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC20.02■□□□□ 0.8
SYNE4Q8N205 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SYNE4Q8N205 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
SYNE4Q8N205 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC20.02■□□□□ 0.8
SYNE4Q8N205 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SYNE4Q8N205 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC20.02■□□□□ 0.8
SYNE4Q8N205 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
SYNE4Q8N205 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
SYNE4Q8N205 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC20.02■□□□□ 0.79
SYNE4Q8N205 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
SYNE4Q8N205 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
SYNE4Q8N205 KRT8P37-201ENST00000451609 1420 ntBASIC20.02■□□□□ 0.79
SYNE4Q8N205 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
SYNE4Q8N205 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SYNE4Q8N205 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC20.01■□□□□ 0.79
SYNE4Q8N205 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SYNE4Q8N205 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
SYNE4Q8N205 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
SYNE4Q8N205 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC20.01■□□□□ 0.79
SYNE4Q8N205 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SYNE4Q8N205 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
SYNE4Q8N205 RHOC-206ENST00000369637 888 ntAPPRIS P1 TSL 3 BASIC20.01■□□□□ 0.79
SYNE4Q8N205 AL450998.2-201ENST00000418525 639 ntTSL 3 BASIC20.01■□□□□ 0.79
SYNE4Q8N205 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC20.01■□□□□ 0.79
SYNE4Q8N205 ELP6-209ENST00000446787 894 ntTSL 3 BASIC20.01■□□□□ 0.79
SYNE4Q8N205 CROCCP4-201ENST00000457096 498 ntBASIC20.01■□□□□ 0.79
SYNE4Q8N205 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC20.01■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms