Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 SUOX-201ENST00000266971 2364 ntAPPRIS P1 TSL 2 BASIC13.66□□□□□ -0.22
CCDC28AQ8IWP9 NALCN-AS1-201ENST00000457843 2846 ntTSL 2 BASIC13.66□□□□□ -0.22
CCDC28AQ8IWP9 ARHGAP10-201ENST00000336498 3299 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CCDC28AQ8IWP9 DRC3-203ENST00000399187 2008 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CCDC28AQ8IWP9 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC13.66□□□□□ -0.22
CCDC28AQ8IWP9 UBTF-205ENST00000526094 2459 ntTSL 5 BASIC13.66□□□□□ -0.22
CCDC28AQ8IWP9 NUBPL-201ENST00000281081 3049 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CCDC28AQ8IWP9 AC036214.1-201ENST00000502766 2126 ntTSL 2 BASIC13.66□□□□□ -0.22
CCDC28AQ8IWP9 ZNF519-206ENST00000589498 2117 ntTSL 2 BASIC13.66□□□□□ -0.22
CCDC28AQ8IWP9 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC13.66□□□□□ -0.22
CCDC28AQ8IWP9 TNIP1-214ENST00000522226 2238 ntAPPRIS P3 TSL 2 BASIC13.66□□□□□ -0.22
CCDC28AQ8IWP9 TNK2-202ENST00000381916 4223 ntTSL 2 BASIC13.66□□□□□ -0.22
CCDC28AQ8IWP9 RPS6KC1-207ENST00000543470 4227 ntTSL 2 BASIC13.66□□□□□ -0.22
CCDC28AQ8IWP9 ALDH3B1-201ENST00000342456 2786 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CCDC28AQ8IWP9 KIF3C-201ENST00000264712 5344 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CCDC28AQ8IWP9 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC13.66□□□□□ -0.22
CCDC28AQ8IWP9 KRT17P2-201ENST00000300992 1314 ntBASIC13.65□□□□□ -0.22
CCDC28AQ8IWP9 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC13.65□□□□□ -0.22
CCDC28AQ8IWP9 INVS-201ENST00000262456 2968 ntTSL 5 BASIC13.65□□□□□ -0.22
CCDC28AQ8IWP9 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
CCDC28AQ8IWP9 GDPD5-201ENST00000336898 3523 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CCDC28AQ8IWP9 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC13.65□□□□□ -0.22
CCDC28AQ8IWP9 MAP3K12-203ENST00000547035 2944 ntAPPRIS ALT2 TSL 5 BASIC13.65□□□□□ -0.22
CCDC28AQ8IWP9 TOE1-201ENST00000372090 2389 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CCDC28AQ8IWP9 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CCDC28AQ8IWP9 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC13.65□□□□□ -0.22
CCDC28AQ8IWP9 PPP6R2-203ENST00000395741 3304 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
CCDC28AQ8IWP9 GRWD1-201ENST00000253237 5571 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CCDC28AQ8IWP9 DNASE1L1-206ENST00000393638 2665 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
CCDC28AQ8IWP9 UNC93B2-201ENST00000285383 730 ntBASIC13.65□□□□□ -0.22
CCDC28AQ8IWP9 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CCDC28AQ8IWP9 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
CCDC28AQ8IWP9 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC13.65□□□□□ -0.22
CCDC28AQ8IWP9 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC13.65□□□□□ -0.22
CCDC28AQ8IWP9 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
CCDC28AQ8IWP9 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC13.65□□□□□ -0.22
CCDC28AQ8IWP9 MFAP1P1-201ENST00000442257 1255 ntBASIC13.65□□□□□ -0.22
CCDC28AQ8IWP9 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC13.65□□□□□ -0.22
CCDC28AQ8IWP9 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC13.65□□□□□ -0.22
CCDC28AQ8IWP9 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC13.65□□□□□ -0.22
CCDC28AQ8IWP9 GRAP-204ENST00000573099 846 ntTSL 3 BASIC13.65□□□□□ -0.22
CCDC28AQ8IWP9 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC13.65□□□□□ -0.22
CCDC28AQ8IWP9 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC13.65□□□□□ -0.22
CCDC28AQ8IWP9 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC13.65□□□□□ -0.22
CCDC28AQ8IWP9 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC13.65□□□□□ -0.22
CCDC28AQ8IWP9 TNFRSF11A-201ENST00000269485 3591 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
CCDC28AQ8IWP9 ANKRD11-203ENST00000378330 9132 ntAPPRIS P2 TSL 1 (best) BASIC13.65□□□□□ -0.22
CCDC28AQ8IWP9 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CCDC28AQ8IWP9 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC13.65□□□□□ -0.22
CCDC28AQ8IWP9 B3GNT4-202ENST00000535274 2938 ntAPPRIS P1 BASIC13.65□□□□□ -0.22
CCDC28AQ8IWP9 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CCDC28AQ8IWP9 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
CCDC28AQ8IWP9 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
CCDC28AQ8IWP9 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC13.65□□□□□ -0.22
CCDC28AQ8IWP9 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
CCDC28AQ8IWP9 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC13.65□□□□□ -0.22
CCDC28AQ8IWP9 MYH14-201ENST00000262269 3848 ntTSL 5 BASIC13.65□□□□□ -0.22
CCDC28AQ8IWP9 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC13.65□□□□□ -0.22
CCDC28AQ8IWP9 RNASEH2C-201ENST00000308418 2794 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CCDC28AQ8IWP9 GJD2-201ENST00000290374 2889 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CCDC28AQ8IWP9 SPECC1-202ENST00000395522 2982 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
CCDC28AQ8IWP9 IL3RA-201ENST00000331035 1706 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CCDC28AQ8IWP9 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CCDC28AQ8IWP9 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC13.64□□□□□ -0.23
CCDC28AQ8IWP9 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CCDC28AQ8IWP9 AC004890.2-205ENST00000416232 2804 ntTSL 2 BASIC13.64□□□□□ -0.23
CCDC28AQ8IWP9 MROH2A-201ENST00000389758 5355 ntAPPRIS ALT2 TSL 5 BASIC13.64□□□□□ -0.23
CCDC28AQ8IWP9 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CCDC28AQ8IWP9 HSD17B4-215ENST00000510025 2589 ntTSL 2 BASIC13.64□□□□□ -0.23
CCDC28AQ8IWP9 TASP1-201ENST00000337743 2352 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CCDC28AQ8IWP9 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
CCDC28AQ8IWP9 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CCDC28AQ8IWP9 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC13.64□□□□□ -0.23
CCDC28AQ8IWP9 AC096733.2-201ENST00000609937 1394 ntBASIC13.64□□□□□ -0.23
CCDC28AQ8IWP9 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC13.64□□□□□ -0.23
CCDC28AQ8IWP9 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
CCDC28AQ8IWP9 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
CCDC28AQ8IWP9 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC13.64□□□□□ -0.23
CCDC28AQ8IWP9 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC13.64□□□□□ -0.23
CCDC28AQ8IWP9 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC13.64□□□□□ -0.23
CCDC28AQ8IWP9 KRT18P23-201ENST00000435622 1283 ntBASIC13.64□□□□□ -0.23
CCDC28AQ8IWP9 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC13.64□□□□□ -0.23
CCDC28AQ8IWP9 DHDH-203ENST00000522614 776 ntTSL 5 BASIC13.64□□□□□ -0.23
CCDC28AQ8IWP9 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC13.64□□□□□ -0.23
CCDC28AQ8IWP9 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC13.64□□□□□ -0.23
CCDC28AQ8IWP9 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC13.64□□□□□ -0.23
CCDC28AQ8IWP9 MIR3180-4-201ENST00000582223 153 ntBASIC13.64□□□□□ -0.23
CCDC28AQ8IWP9 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC13.64□□□□□ -0.23
CCDC28AQ8IWP9 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC13.64□□□□□ -0.23
CCDC28AQ8IWP9 LBH-201ENST00000395323 2933 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CCDC28AQ8IWP9 CNOT10-201ENST00000328834 2815 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CCDC28AQ8IWP9 CAMKV-202ENST00000463537 2818 ntTSL 5 BASIC13.64□□□□□ -0.23
CCDC28AQ8IWP9 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC13.64□□□□□ -0.23
CCDC28AQ8IWP9 C2-206ENST00000442278 2434 ntTSL 2 BASIC13.64□□□□□ -0.23
CCDC28AQ8IWP9 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC13.64□□□□□ -0.23
CCDC28AQ8IWP9 SFI1-229ENST00000540643 4226 ntAPPRIS ALT2 TSL 2 BASIC13.64□□□□□ -0.23
CCDC28AQ8IWP9 DOCK4-206ENST00000437633 6212 ntAPPRIS P2 TSL 1 (best) BASIC13.64□□□□□ -0.23
CCDC28AQ8IWP9 FGFR1-201ENST00000326324 3816 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
CCDC28AQ8IWP9 FGFR1-204ENST00000356207 3824 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
CCDC28AQ8IWP9 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC13.64□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms