Protein–RNA interactions for Protein: Q5VTR2

RNF20, E3 ubiquitin-protein ligase BRE1A, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF20Q5VTR2 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
RNF20Q5VTR2 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
RNF20Q5VTR2 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
RNF20Q5VTR2 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC19.42■□□□□ 0.7
RNF20Q5VTR2 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
RNF20Q5VTR2 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
RNF20Q5VTR2 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
RNF20Q5VTR2 DZIP1-203ENST00000361396 7418 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
RNF20Q5VTR2 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
RNF20Q5VTR2 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
RNF20Q5VTR2 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC19.41■□□□□ 0.7
RNF20Q5VTR2 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
RNF20Q5VTR2 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC19.41■□□□□ 0.7
RNF20Q5VTR2 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
RNF20Q5VTR2 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
RNF20Q5VTR2 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
RNF20Q5VTR2 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC19.41■□□□□ 0.7
RNF20Q5VTR2 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
RNF20Q5VTR2 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
RNF20Q5VTR2 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
RNF20Q5VTR2 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC19.41■□□□□ 0.7
RNF20Q5VTR2 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
RNF20Q5VTR2 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC19.41■□□□□ 0.7
RNF20Q5VTR2 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC19.41■□□□□ 0.7
RNF20Q5VTR2 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC19.41■□□□□ 0.7
RNF20Q5VTR2 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC19.41■□□□□ 0.7
RNF20Q5VTR2 AL138918.1-201ENST00000568306 659 ntBASIC19.41■□□□□ 0.7
RNF20Q5VTR2 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
RNF20Q5VTR2 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
RNF20Q5VTR2 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
RNF20Q5VTR2 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
RNF20Q5VTR2 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC19.41■□□□□ 0.7
RNF20Q5VTR2 AC112504.1-201ENST00000623415 1841 ntBASIC19.41■□□□□ 0.7
RNF20Q5VTR2 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
RNF20Q5VTR2 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
RNF20Q5VTR2 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC19.41■□□□□ 0.7
RNF20Q5VTR2 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC19.41■□□□□ 0.7
RNF20Q5VTR2 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
RNF20Q5VTR2 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC19.4■□□□□ 0.7
RNF20Q5VTR2 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC19.4■□□□□ 0.7
RNF20Q5VTR2 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
RNF20Q5VTR2 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
RNF20Q5VTR2 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
RNF20Q5VTR2 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
RNF20Q5VTR2 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
RNF20Q5VTR2 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
RNF20Q5VTR2 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
RNF20Q5VTR2 FABP5-202ENST00000396359 986 ntTSL 5 BASIC19.4■□□□□ 0.7
RNF20Q5VTR2 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
RNF20Q5VTR2 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC19.4■□□□□ 0.7
RNF20Q5VTR2 ADH5P3-201ENST00000433842 1137 ntBASIC19.4■□□□□ 0.7
RNF20Q5VTR2 MKNK2P1-201ENST00000437526 628 ntBASIC19.4■□□□□ 0.7
RNF20Q5VTR2 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC19.4■□□□□ 0.7
RNF20Q5VTR2 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC19.4■□□□□ 0.7
RNF20Q5VTR2 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC19.4■□□□□ 0.7
RNF20Q5VTR2 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC19.4■□□□□ 0.7
RNF20Q5VTR2 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC19.4■□□□□ 0.7
RNF20Q5VTR2 INO80E-210ENST00000567705 880 ntTSL 3 BASIC19.4■□□□□ 0.7
RNF20Q5VTR2 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC19.4■□□□□ 0.7
RNF20Q5VTR2 AC027307.2-201ENST00000591252 911 ntBASIC19.4■□□□□ 0.7
RNF20Q5VTR2 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC19.4■□□□□ 0.7
RNF20Q5VTR2 SPTSSB-204ENST00000617024 1292 ntBASIC19.4■□□□□ 0.7
RNF20Q5VTR2 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
RNF20Q5VTR2 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
RNF20Q5VTR2 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
RNF20Q5VTR2 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
RNF20Q5VTR2 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC19.4■□□□□ 0.7
RNF20Q5VTR2 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
RNF20Q5VTR2 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
RNF20Q5VTR2 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
RNF20Q5VTR2 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC19.4■□□□□ 0.7
RNF20Q5VTR2 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC19.4■□□□□ 0.7
RNF20Q5VTR2 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC19.4■□□□□ 0.7
RNF20Q5VTR2 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
RNF20Q5VTR2 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
RNF20Q5VTR2 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
RNF20Q5VTR2 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
RNF20Q5VTR2 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC19.39■□□□□ 0.7
RNF20Q5VTR2 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
RNF20Q5VTR2 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC19.39■□□□□ 0.69
RNF20Q5VTR2 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
RNF20Q5VTR2 ACE-203ENST00000413513 2237 ntTSL 2 BASIC19.39■□□□□ 0.69
RNF20Q5VTR2 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
RNF20Q5VTR2 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC19.39■□□□□ 0.69
RNF20Q5VTR2 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC19.39■□□□□ 0.69
RNF20Q5VTR2 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC19.39■□□□□ 0.69
RNF20Q5VTR2 SPDYE11-202ENST00000450699 704 ntBASIC19.39■□□□□ 0.69
RNF20Q5VTR2 SPDYE9P-201ENST00000570642 692 ntBASIC19.39■□□□□ 0.69
RNF20Q5VTR2 AC024267.1-201ENST00000582320 895 ntBASIC19.39■□□□□ 0.69
RNF20Q5VTR2 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC19.39■□□□□ 0.69
RNF20Q5VTR2 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC19.39■□□□□ 0.69
RNF20Q5VTR2 AC026120.1-201ENST00000611536 926 ntBASIC19.39■□□□□ 0.69
RNF20Q5VTR2 SPDYE10P-202ENST00000612005 668 ntBASIC19.39■□□□□ 0.69
RNF20Q5VTR2 SPDYE8P-202ENST00000612377 668 ntBASIC19.39■□□□□ 0.69
RNF20Q5VTR2 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC19.39■□□□□ 0.69
RNF20Q5VTR2 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
RNF20Q5VTR2 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC19.39■□□□□ 0.69
RNF20Q5VTR2 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
RNF20Q5VTR2 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
RNF20Q5VTR2 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC19.39■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 65.4 ms