Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC88AQ3V6T2 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC88AQ3V6T2 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC88AQ3V6T2 SPIN2A-201ENST00000374906 1319 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC88AQ3V6T2 THEG-202ENST00000346878 1211 ntAPPRIS ALT2 TSL 2 BASIC19.56■□□□□ 0.72
CCDC88AQ3V6T2 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC88AQ3V6T2 FCGR1B-203ENST00000369384 1044 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC88AQ3V6T2 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
CCDC88AQ3V6T2 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC19.56■□□□□ 0.72
CCDC88AQ3V6T2 MTX1P1-201ENST00000440904 838 ntBASIC19.56■□□□□ 0.72
CCDC88AQ3V6T2 EIF4HP1-201ENST00000453115 687 ntBASIC19.56■□□□□ 0.72
CCDC88AQ3V6T2 SELENOW-201ENST00000509570 881 ntTSL 5 BASIC19.56■□□□□ 0.72
CCDC88AQ3V6T2 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC19.56■□□□□ 0.72
CCDC88AQ3V6T2 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC19.56■□□□□ 0.72
CCDC88AQ3V6T2 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC88AQ3V6T2 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC88AQ3V6T2 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC88AQ3V6T2 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC88AQ3V6T2 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC88AQ3V6T2 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC88AQ3V6T2 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC19.56■□□□□ 0.72
CCDC88AQ3V6T2 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC19.56■□□□□ 0.72
CCDC88AQ3V6T2 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC88AQ3V6T2 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC88AQ3V6T2 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC19.56■□□□□ 0.72
CCDC88AQ3V6T2 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
CCDC88AQ3V6T2 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC19.56■□□□□ 0.72
CCDC88AQ3V6T2 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC88AQ3V6T2 AL138767.1-201ENST00000354527 744 ntTSL 3 BASIC19.56■□□□□ 0.72
CCDC88AQ3V6T2 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC88AQ3V6T2 CNN2P8-201ENST00000421872 913 ntBASIC19.56■□□□□ 0.72
CCDC88AQ3V6T2 AC134915.1-201ENST00000426461 574 ntBASIC19.56■□□□□ 0.72
CCDC88AQ3V6T2 PGAP2-214ENST00000465307 1100 ntTSL 2 BASIC19.56■□□□□ 0.72
CCDC88AQ3V6T2 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC19.56■□□□□ 0.72
CCDC88AQ3V6T2 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC19.56■□□□□ 0.72
CCDC88AQ3V6T2 AC016629.1-201ENST00000596579 586 ntBASIC19.56■□□□□ 0.72
CCDC88AQ3V6T2 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC19.56■□□□□ 0.72
CCDC88AQ3V6T2 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC88AQ3V6T2 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC19.55■□□□□ 0.72
CCDC88AQ3V6T2 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
CCDC88AQ3V6T2 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
CCDC88AQ3V6T2 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CCDC88AQ3V6T2 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC19.55■□□□□ 0.72
CCDC88AQ3V6T2 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
CCDC88AQ3V6T2 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CCDC88AQ3V6T2 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC19.55■□□□□ 0.72
CCDC88AQ3V6T2 U82695.1-201ENST00000635752 1889 ntBASIC19.55■□□□□ 0.72
CCDC88AQ3V6T2 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CCDC88AQ3V6T2 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CCDC88AQ3V6T2 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CCDC88AQ3V6T2 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
CCDC88AQ3V6T2 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CCDC88AQ3V6T2 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CCDC88AQ3V6T2 HIST1H2AJ-201ENST00000333151 387 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
CCDC88AQ3V6T2 C9orf16-201ENST00000372994 713 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CCDC88AQ3V6T2 BMS1P17-203ENST00000444357 552 ntTSL 4 BASIC19.55■□□□□ 0.72
CCDC88AQ3V6T2 FAM86LP-201ENST00000478302 853 ntBASIC19.55■□□□□ 0.72
CCDC88AQ3V6T2 AC074194.1-201ENST00000505025 622 ntTSL 4 BASIC19.55■□□□□ 0.72
CCDC88AQ3V6T2 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC19.55■□□□□ 0.72
CCDC88AQ3V6T2 PLA2G4C-AS1-201ENST00000596552 568 ntTSL 3 BASIC19.55■□□□□ 0.72
CCDC88AQ3V6T2 COPS9-205ENST00000607357 418 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CCDC88AQ3V6T2 BMS1P22-203ENST00000609679 552 ntTSL 4 BASIC19.55■□□□□ 0.72
CCDC88AQ3V6T2 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CCDC88AQ3V6T2 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
CCDC88AQ3V6T2 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
CCDC88AQ3V6T2 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC19.55■□□□□ 0.72
CCDC88AQ3V6T2 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CCDC88AQ3V6T2 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
CCDC88AQ3V6T2 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
CCDC88AQ3V6T2 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
CCDC88AQ3V6T2 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
CCDC88AQ3V6T2 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC19.54■□□□□ 0.72
CCDC88AQ3V6T2 PKIG-203ENST00000372887 769 ntTSL 3 BASIC19.54■□□□□ 0.72
CCDC88AQ3V6T2 LARGE-AS1-202ENST00000424291 1065 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CCDC88AQ3V6T2 AP001889.1-201ENST00000525414 633 ntBASIC19.54■□□□□ 0.72
CCDC88AQ3V6T2 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC19.54■□□□□ 0.72
CCDC88AQ3V6T2 MIR6727-201ENST00000620702 65 ntBASIC19.54■□□□□ 0.72
CCDC88AQ3V6T2 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC19.54■□□□□ 0.72
CCDC88AQ3V6T2 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
CCDC88AQ3V6T2 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC19.54■□□□□ 0.72
CCDC88AQ3V6T2 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
CCDC88AQ3V6T2 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CCDC88AQ3V6T2 AL592424.1-201ENST00000563624 1536 ntBASIC19.54■□□□□ 0.72
CCDC88AQ3V6T2 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC19.54■□□□□ 0.72
CCDC88AQ3V6T2 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CCDC88AQ3V6T2 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC19.54■□□□□ 0.72
CCDC88AQ3V6T2 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CCDC88AQ3V6T2 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC19.54■□□□□ 0.72
CCDC88AQ3V6T2 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC19.54■□□□□ 0.72
CCDC88AQ3V6T2 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC19.54■□□□□ 0.72
CCDC88AQ3V6T2 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC19.54■□□□□ 0.72
CCDC88AQ3V6T2 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC19.54■□□□□ 0.72
CCDC88AQ3V6T2 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CCDC88AQ3V6T2 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
CCDC88AQ3V6T2 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CCDC88AQ3V6T2 AC016723.1-201ENST00000430546 633 ntTSL 3 BASIC19.54■□□□□ 0.72
CCDC88AQ3V6T2 REEP1-202ENST00000453231 940 ntTSL 2 BASIC19.54■□□□□ 0.72
CCDC88AQ3V6T2 AC126768.2-201ENST00000511693 718 ntTSL 3 BASIC19.54■□□□□ 0.72
CCDC88AQ3V6T2 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CCDC88AQ3V6T2 AC005622.1-201ENST00000636801 1703 ntBASIC19.54■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 99 ms