Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC9.81□□□□□ -0.84
HSPG2P98160 AC138894.2-201ENST00000602838 371 ntBASIC9.81□□□□□ -0.84
HSPG2P98160 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC9.81□□□□□ -0.84
HSPG2P98160 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC9.81□□□□□ -0.84
HSPG2P98160 PSMB4-201ENST00000290541 964 ntAPPRIS P1 TSL 1 (best) BASIC9.81□□□□□ -0.84
HSPG2P98160 S100A2-203ENST00000368709 457 ntAPPRIS P1 TSL 3 BASIC9.81□□□□□ -0.84
HSPG2P98160 AC004987.2-201ENST00000395959 1148 ntBASIC9.81□□□□□ -0.84
HSPG2P98160 SETD7-203ENST00000406354 1127 ntTSL 1 (best) BASIC9.81□□□□□ -0.84
HSPG2P98160 NPPC-202ENST00000409852 1051 ntAPPRIS P1 TSL 3 BASIC9.81□□□□□ -0.84
HSPG2P98160 PDIA3P2-201ENST00000428073 158 ntBASIC9.81□□□□□ -0.84
HSPG2P98160 RANGRF-205ENST00000580434 749 ntTSL 1 (best) BASIC9.81□□□□□ -0.84
HSPG2P98160 AC127024.7-201ENST00000625101 200 ntBASIC9.81□□□□□ -0.84
HSPG2P98160 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC9.81□□□□□ -0.84
HSPG2P98160 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC9.81□□□□□ -0.84
HSPG2P98160 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC9.81□□□□□ -0.84
HSPG2P98160 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC9.81□□□□□ -0.84
HSPG2P98160 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC9.81□□□□□ -0.84
HSPG2P98160 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC9.81□□□□□ -0.84
HSPG2P98160 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC9.8□□□□□ -0.84
HSPG2P98160 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC9.8□□□□□ -0.84
HSPG2P98160 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC9.8□□□□□ -0.84
HSPG2P98160 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC9.8□□□□□ -0.84
HSPG2P98160 ABALON-201ENST00000629058 1903 ntBASIC9.8□□□□□ -0.84
HSPG2P98160 AC019193.1-201ENST00000506678 823 ntBASIC9.8□□□□□ -0.84
HSPG2P98160 NEU3-205ENST00000531619 582 ntTSL 5 BASIC9.8□□□□□ -0.84
HSPG2P98160 MIR4649-201ENST00000582839 64 ntBASIC9.8□□□□□ -0.84
HSPG2P98160 LRWD1-209ENST00000626402 138 ntTSL 3 BASIC9.8□□□□□ -0.84
HSPG2P98160 AL805961.1-201ENST00000642026 753 ntBASIC9.8□□□□□ -0.84
HSPG2P98160 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC9.8□□□□□ -0.84
HSPG2P98160 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC9.8□□□□□ -0.84
HSPG2P98160 ARF5-201ENST00000000233 1103 ntAPPRIS P1 TSL 1 (best) BASIC9.8□□□□□ -0.84
HSPG2P98160 COX4I1-201ENST00000253452 708 ntAPPRIS P1 TSL 1 (best) BASIC9.8□□□□□ -0.84
HSPG2P98160 GSTT2B-201ENST00000290765 1099 ntAPPRIS P1 TSL 1 (best) BASIC9.8□□□□□ -0.84
HSPG2P98160 CD1E-202ENST00000368155 696 ntTSL 1 (best) BASIC9.8□□□□□ -0.84
HSPG2P98160 CD1E-204ENST00000368157 399 ntTSL 1 (best) BASIC9.8□□□□□ -0.84
HSPG2P98160 FAM27C-201ENST00000377542 616 ntTSL 1 (best) BASIC9.8□□□□□ -0.84
HSPG2P98160 AC007274.2-201ENST00000421675 662 ntBASIC9.8□□□□□ -0.84
HSPG2P98160 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC9.8□□□□□ -0.84
HSPG2P98160 AC026410.1-201ENST00000507366 1101 ntBASIC9.8□□□□□ -0.84
HSPG2P98160 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC9.8□□□□□ -0.84
HSPG2P98160 SLED1-202ENST00000512051 380 ntBASIC9.8□□□□□ -0.84
HSPG2P98160 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC9.8□□□□□ -0.84
HSPG2P98160 AC068025.1-201ENST00000577218 762 ntTSL 3 BASIC9.8□□□□□ -0.84
HSPG2P98160 KSR1-207ENST00000578981 748 ntTSL 4 BASIC9.8□□□□□ -0.84
HSPG2P98160 FAM104A-204ENST00000580032 451 ntTSL 3 BASIC9.8□□□□□ -0.84
HSPG2P98160 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC9.8□□□□□ -0.84
HSPG2P98160 LINC01672-205ENST00000635092 633 ntTSL 5 BASIC9.8□□□□□ -0.84
HSPG2P98160 EDDM13-208ENST00000637802 854 ntAPPRIS P1 TSL 5 BASIC9.8□□□□□ -0.84
HSPG2P98160 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC9.8□□□□□ -0.84
HSPG2P98160 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC9.8□□□□□ -0.84
HSPG2P98160 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC9.8□□□□□ -0.84
HSPG2P98160 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC9.8□□□□□ -0.84
HSPG2P98160 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC9.8□□□□□ -0.84
HSPG2P98160 GSDMA-203ENST00000635792 1546 ntAPPRIS P1 TSL 5 BASIC9.8□□□□□ -0.84
HSPG2P98160 COMP-202ENST00000425807 2292 ntTSL 2 BASIC9.8□□□□□ -0.84
HSPG2P98160 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC9.8□□□□□ -0.84
HSPG2P98160 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC9.8□□□□□ -0.84
HSPG2P98160 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC9.8□□□□□ -0.84
HSPG2P98160 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC9.8□□□□□ -0.84
HSPG2P98160 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC9.8□□□□□ -0.84
HSPG2P98160 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC9.8□□□□□ -0.84
HSPG2P98160 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC9.8□□□□□ -0.84
HSPG2P98160 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC9.8□□□□□ -0.84
HSPG2P98160 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC9.8□□□□□ -0.84
HSPG2P98160 ERCC1-203ENST00000340192 949 ntTSL 1 (best) BASIC9.8□□□□□ -0.84
HSPG2P98160 IGHV3-37-201ENST00000518544 340 ntBASIC9.8□□□□□ -0.84
HSPG2P98160 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC9.8□□□□□ -0.84
HSPG2P98160 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC9.8□□□□□ -0.84
HSPG2P98160 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC9.8□□□□□ -0.84
HSPG2P98160 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC9.8□□□□□ -0.84
HSPG2P98160 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC9.8□□□□□ -0.84
HSPG2P98160 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC9.8□□□□□ -0.84
HSPG2P98160 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC9.8□□□□□ -0.84
HSPG2P98160 MAEA-207ENST00000505177 1340 ntTSL 5 BASIC9.8□□□□□ -0.84
HSPG2P98160 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC9.8□□□□□ -0.84
HSPG2P98160 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC9.8□□□□□ -0.84
HSPG2P98160 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC9.8□□□□□ -0.84
HSPG2P98160 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC9.8□□□□□ -0.84
HSPG2P98160 MRPS12-201ENST00000308018 1207 ntAPPRIS P1 TSL 1 (best) BASIC9.79□□□□□ -0.84
HSPG2P98160 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC9.79□□□□□ -0.84
HSPG2P98160 AL353770.1-201ENST00000614915 403 ntBASIC9.79□□□□□ -0.84
HSPG2P98160 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC9.79□□□□□ -0.84
HSPG2P98160 AC068790.8-201ENST00000618862 504 ntAPPRIS P1 TSL 3 BASIC9.79□□□□□ -0.84
HSPG2P98160 AP001043.1-205ENST00000623098 1033 ntTSL 5 BASIC9.79□□□□□ -0.84
HSPG2P98160 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC9.79□□□□□ -0.84
HSPG2P98160 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC9.79□□□□□ -0.84
HSPG2P98160 GRN-214ENST00000589265 1632 ntTSL 5 BASIC9.79□□□□□ -0.84
HSPG2P98160 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC9.79□□□□□ -0.84
HSPG2P98160 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC9.79□□□□□ -0.84
HSPG2P98160 AL354989.2-201ENST00000435838 1540 ntBASIC9.79□□□□□ -0.84
HSPG2P98160 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC9.79□□□□□ -0.84
HSPG2P98160 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC9.79□□□□□ -0.84
HSPG2P98160 SERPINE3-201ENST00000400389 1218 ntAPPRIS P1 TSL 1 (best) BASIC9.79□□□□□ -0.84
HSPG2P98160 AL139339.1-201ENST00000411906 657 ntTSL 2 BASIC9.79□□□□□ -0.84
HSPG2P98160 AC079178.1-201ENST00000420915 656 ntBASIC9.79□□□□□ -0.84
HSPG2P98160 SEPT7P2-209ENST00000450436 601 ntTSL 4 BASIC9.79□□□□□ -0.84
HSPG2P98160 CPLX2-209ENST00000515094 576 ntAPPRIS P1 TSL 4 BASIC9.79□□□□□ -0.84
HSPG2P98160 AC246817.2-203ENST00000517357 569 ntTSL 4 BASIC9.79□□□□□ -0.84
HSPG2P98160 PGAM1P5-201ENST00000548011 764 ntBASIC9.79□□□□□ -0.84
HSPG2P98160 PAM16-215ENST00000577031 548 ntTSL 4 BASIC9.79□□□□□ -0.84
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms