Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC13.96□□□□□ -0.17
ABCA4P78363 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
ABCA4P78363 CA12-203ENST00000422263 2556 ntTSL 2 BASIC13.96□□□□□ -0.17
ABCA4P78363 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.18
ABCA4P78363 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
ABCA4P78363 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
ABCA4P78363 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.18
ABCA4P78363 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
ABCA4P78363 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC13.95□□□□□ -0.18
ABCA4P78363 GALT-202ENST00000450095 1280 ntTSL 2 BASIC13.95□□□□□ -0.18
ABCA4P78363 AL589987.1-201ENST00000453380 819 ntBASIC13.95□□□□□ -0.18
ABCA4P78363 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC13.95□□□□□ -0.18
ABCA4P78363 ORC6-206ENST00000568364 888 ntTSL 5 BASIC13.95□□□□□ -0.18
ABCA4P78363 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.18
ABCA4P78363 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC13.95□□□□□ -0.18
ABCA4P78363 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC13.95□□□□□ -0.18
ABCA4P78363 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC13.95□□□□□ -0.18
ABCA4P78363 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
ABCA4P78363 PDIA3P1-201ENST00000471856 1510 ntBASIC13.95□□□□□ -0.18
ABCA4P78363 XPO5-201ENST00000265351 5364 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
ABCA4P78363 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
ABCA4P78363 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
ABCA4P78363 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC13.95□□□□□ -0.18
ABCA4P78363 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
ABCA4P78363 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
ABCA4P78363 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC13.95□□□□□ -0.18
ABCA4P78363 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
ABCA4P78363 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC13.95□□□□□ -0.18
ABCA4P78363 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC13.95□□□□□ -0.18
ABCA4P78363 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC13.95□□□□□ -0.18
ABCA4P78363 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
ABCA4P78363 ACTBP11-201ENST00000436287 1126 ntBASIC13.95□□□□□ -0.18
ABCA4P78363 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC13.95□□□□□ -0.18
ABCA4P78363 PTK7-212ENST00000476760 902 ntTSL 2 BASIC13.95□□□□□ -0.18
ABCA4P78363 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC13.95□□□□□ -0.18
ABCA4P78363 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
ABCA4P78363 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC13.95□□□□□ -0.18
ABCA4P78363 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC13.95□□□□□ -0.18
ABCA4P78363 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
ABCA4P78363 AL645608.8-201ENST00000606034 2086 ntBASIC13.95□□□□□ -0.18
ABCA4P78363 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC13.95□□□□□ -0.18
ABCA4P78363 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
ABCA4P78363 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.18
ABCA4P78363 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC13.95□□□□□ -0.18
ABCA4P78363 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
ABCA4P78363 AC011676.5-201ENST00000624864 2660 ntBASIC13.94□□□□□ -0.18
ABCA4P78363 PLA2G5-201ENST00000375108 1161 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
ABCA4P78363 IGLV2-23-201ENST00000390306 502 ntAPPRIS P1 BASIC13.94□□□□□ -0.18
ABCA4P78363 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
ABCA4P78363 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC13.94□□□□□ -0.18
ABCA4P78363 ROPN1-207ENST00000484329 566 ntTSL 3 BASIC13.94□□□□□ -0.18
ABCA4P78363 RCAN1-212ENST00000492600 935 ntTSL 2 BASIC13.94□□□□□ -0.18
ABCA4P78363 DOC2GP-202ENST00000514950 1163 ntBASIC13.94□□□□□ -0.18
ABCA4P78363 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
ABCA4P78363 USB1-203ENST00000539737 1212 ntTSL 2 BASIC13.94□□□□□ -0.18
ABCA4P78363 GSTZ1-219ENST00000557639 873 ntTSL 2 BASIC13.94□□□□□ -0.18
ABCA4P78363 RRP7BP-205ENST00000566851 833 ntBASIC13.94□□□□□ -0.18
ABCA4P78363 AC015936.2-201ENST00000593177 259 ntBASIC13.94□□□□□ -0.18
ABCA4P78363 AC026979.3-201ENST00000607315 403 ntBASIC13.94□□□□□ -0.18
ABCA4P78363 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC13.94□□□□□ -0.18
ABCA4P78363 AL109936.8-201ENST00000641772 604 ntBASIC13.94□□□□□ -0.18
ABCA4P78363 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
ABCA4P78363 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
ABCA4P78363 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
ABCA4P78363 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
ABCA4P78363 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
ABCA4P78363 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
ABCA4P78363 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
ABCA4P78363 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
ABCA4P78363 PLSCR4-204ENST00000446574 1442 ntAPPRIS P1 TSL 2 BASIC13.94□□□□□ -0.18
ABCA4P78363 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
ABCA4P78363 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
ABCA4P78363 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC13.94□□□□□ -0.18
ABCA4P78363 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
ABCA4P78363 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
ABCA4P78363 AC092171.3-201ENST00000610122 2651 ntBASIC13.94□□□□□ -0.18
ABCA4P78363 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
ABCA4P78363 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC13.94□□□□□ -0.18
ABCA4P78363 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
ABCA4P78363 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
ABCA4P78363 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC13.94□□□□□ -0.18
ABCA4P78363 ANKRD19P-201ENST00000338192 862 ntBASIC13.94□□□□□ -0.18
ABCA4P78363 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC13.94□□□□□ -0.18
ABCA4P78363 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC13.94□□□□□ -0.18
ABCA4P78363 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC13.94□□□□□ -0.18
ABCA4P78363 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC13.94□□□□□ -0.18
ABCA4P78363 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC13.94□□□□□ -0.18
ABCA4P78363 DSCR3-207ENST00000476950 937 ntTSL 2 BASIC13.94□□□□□ -0.18
ABCA4P78363 AC135178.3-201ENST00000583963 531 ntTSL 4 BASIC13.94□□□□□ -0.18
ABCA4P78363 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC13.94□□□□□ -0.18
ABCA4P78363 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC13.94□□□□□ -0.18
ABCA4P78363 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
ABCA4P78363 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
ABCA4P78363 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
ABCA4P78363 AP001094.4-201ENST00000579008 2176 ntBASIC13.94□□□□□ -0.18
ABCA4P78363 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
ABCA4P78363 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
ABCA4P78363 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
ABCA4P78363 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC13.94□□□□□ -0.18
ABCA4P78363 REXO1L6P-201ENST00000603433 1515 ntBASIC13.94□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 55.8 ms