Protein–RNA interactions for Protein: P60709

ACTB, Actin, cytoplasmic 1, humanhuman

Predictions only

Length 375 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ACTBP60709 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC14.04□□□□□ -0.16
ACTBP60709 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
ACTBP60709 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
ACTBP60709 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC14.04□□□□□ -0.16
ACTBP60709 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC14.04□□□□□ -0.16
ACTBP60709 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
ACTBP60709 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
ACTBP60709 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC14.04□□□□□ -0.16
ACTBP60709 B4GALNT3-201ENST00000266383 5068 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
ACTBP60709 USP36-201ENST00000312010 5234 ntAPPRIS P2 TSL 5 BASIC14.04□□□□□ -0.16
ACTBP60709 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
ACTBP60709 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
ACTBP60709 TNFRSF11A-202ENST00000586569 8147 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
ACTBP60709 AC020658.6-201ENST00000623564 1870 ntBASIC14.04□□□□□ -0.16
ACTBP60709 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
ACTBP60709 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
ACTBP60709 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
ACTBP60709 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
ACTBP60709 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
ACTBP60709 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC14.03□□□□□ -0.16
ACTBP60709 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
ACTBP60709 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
ACTBP60709 AC004817.3-201ENST00000602957 2129 ntBASIC14.03□□□□□ -0.16
ACTBP60709 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
ACTBP60709 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
ACTBP60709 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
ACTBP60709 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC14.03□□□□□ -0.16
ACTBP60709 MYLK3-201ENST00000394809 6911 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
ACTBP60709 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC14.03□□□□□ -0.16
ACTBP60709 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
ACTBP60709 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC14.03□□□□□ -0.16
ACTBP60709 ASCC3-207ENST00000522650 2828 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
ACTBP60709 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
ACTBP60709 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
ACTBP60709 OTULIN-201ENST00000284274 7800 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
ACTBP60709 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
ACTBP60709 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
ACTBP60709 FUOM-202ENST00000368551 628 ntTSL 3 BASIC14.03□□□□□ -0.16
ACTBP60709 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC14.03□□□□□ -0.16
ACTBP60709 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
ACTBP60709 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC14.03□□□□□ -0.16
ACTBP60709 WDR53-204ENST00000433160 887 ntTSL 5 BASIC14.03□□□□□ -0.16
ACTBP60709 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
ACTBP60709 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC14.03□□□□□ -0.16
ACTBP60709 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC14.03□□□□□ -0.16
ACTBP60709 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
ACTBP60709 FICD-205ENST00000552758 603 ntTSL 2 BASIC14.03□□□□□ -0.16
ACTBP60709 MPDU1-223ENST00000582151 728 ntBASIC14.03□□□□□ -0.16
ACTBP60709 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC14.03□□□□□ -0.16
ACTBP60709 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
ACTBP60709 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC14.03□□□□□ -0.16
ACTBP60709 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
ACTBP60709 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
ACTBP60709 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC14.03□□□□□ -0.16
ACTBP60709 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC14.03□□□□□ -0.16
ACTBP60709 KIF1C-201ENST00000320785 7919 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
ACTBP60709 AC092919.2-201ENST00000623631 1645 ntBASIC14.03□□□□□ -0.16
ACTBP60709 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
ACTBP60709 AKNA-206ENST00000374088 5464 ntAPPRIS P2 TSL 2 BASIC14.03□□□□□ -0.16
ACTBP60709 ARHGEF5-201ENST00000056217 5544 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
ACTBP60709 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
ACTBP60709 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC14.03□□□□□ -0.16
ACTBP60709 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
ACTBP60709 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
ACTBP60709 SCAMP2-201ENST00000268099 2453 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
ACTBP60709 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC14.03□□□□□ -0.16
ACTBP60709 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
ACTBP60709 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
ACTBP60709 LINC00639-201ENST00000553932 4496 ntTSL 2 BASIC14.03□□□□□ -0.16
ACTBP60709 DSEL-201ENST00000310045 9531 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.16
ACTBP60709 PTPN13-203ENST00000427191 8487 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
ACTBP60709 SPTLC2-201ENST00000216484 8170 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
ACTBP60709 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
ACTBP60709 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
ACTBP60709 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
ACTBP60709 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
ACTBP60709 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
ACTBP60709 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
ACTBP60709 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
ACTBP60709 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC14.02□□□□□ -0.16
ACTBP60709 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
ACTBP60709 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
ACTBP60709 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
ACTBP60709 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC14.02□□□□□ -0.16
ACTBP60709 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC14.02□□□□□ -0.16
ACTBP60709 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
ACTBP60709 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
ACTBP60709 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
ACTBP60709 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC14.02□□□□□ -0.16
ACTBP60709 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
ACTBP60709 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.16
ACTBP60709 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
ACTBP60709 ZNF70-201ENST00000341976 6924 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
ACTBP60709 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
ACTBP60709 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
ACTBP60709 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC14.02□□□□□ -0.17
ACTBP60709 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC14.02□□□□□ -0.17
ACTBP60709 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC14.02□□□□□ -0.17
ACTBP60709 FOSL1P1-201ENST00000511041 816 ntBASIC14.02□□□□□ -0.17
ACTBP60709 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC14.02□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 61.5 ms