Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
COL4A4P53420 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
COL4A4P53420 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
COL4A4P53420 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
COL4A4P53420 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
COL4A4P53420 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC17.08■□□□□ 0.32
COL4A4P53420 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC17.08■□□□□ 0.32
COL4A4P53420 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
COL4A4P53420 HARS-202ENST00000415192 1401 ntTSL 2 BASIC17.07■□□□□ 0.32
COL4A4P53420 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL4A4P53420 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
COL4A4P53420 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC17.07■□□□□ 0.32
COL4A4P53420 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC17.07■□□□□ 0.32
COL4A4P53420 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
COL4A4P53420 CALR4P-201ENST00000431943 946 ntBASIC17.07■□□□□ 0.32
COL4A4P53420 AC126768.2-201ENST00000511693 718 ntTSL 3 BASIC17.07■□□□□ 0.32
COL4A4P53420 GTF2H2-204ENST00000517900 659 ntTSL 5 BASIC17.07■□□□□ 0.32
COL4A4P53420 ACYP1-206ENST00000555694 565 ntAPPRIS P1 TSL 3 BASIC17.07■□□□□ 0.32
COL4A4P53420 RHOXF1P1-202ENST00000635473 501 ntBASIC17.07■□□□□ 0.32
COL4A4P53420 LINC00854-216ENST00000636331 718 ntAPPRIS P5 TSL 5 BASIC17.07■□□□□ 0.32
COL4A4P53420 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL4A4P53420 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL4A4P53420 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL4A4P53420 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL4A4P53420 AC005052.1-201ENST00000625181 2492 ntBASIC17.07■□□□□ 0.32
COL4A4P53420 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC17.07■□□□□ 0.32
COL4A4P53420 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
COL4A4P53420 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC17.07■□□□□ 0.32
COL4A4P53420 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL4A4P53420 OSM-202ENST00000403389 1000 ntAPPRIS ALT2 TSL 3 BASIC17.07■□□□□ 0.32
COL4A4P53420 ZNF564-202ENST00000416136 255 ntTSL 3 BASIC17.07■□□□□ 0.32
COL4A4P53420 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL4A4P53420 AP000812.2-201ENST00000538934 718 ntBASIC17.07■□□□□ 0.32
COL4A4P53420 IKZF1-217ENST00000612658 962 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
COL4A4P53420 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL4A4P53420 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC17.07■□□□□ 0.32
COL4A4P53420 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
COL4A4P53420 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC17.07■□□□□ 0.32
COL4A4P53420 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL4A4P53420 MSTO2P-201ENST00000314835 1709 ntBASIC17.06■□□□□ 0.32
COL4A4P53420 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC17.06■□□□□ 0.32
COL4A4P53420 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
COL4A4P53420 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL4A4P53420 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL4A4P53420 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC17.06■□□□□ 0.32
COL4A4P53420 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL4A4P53420 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC17.06■□□□□ 0.32
COL4A4P53420 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL4A4P53420 CHST10-203ENST00000409701 1338 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL4A4P53420 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL4A4P53420 C1orf123-201ENST00000294360 1085 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL4A4P53420 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
COL4A4P53420 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC17.06■□□□□ 0.32
COL4A4P53420 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL4A4P53420 ACTG1P3-201ENST00000431775 1114 ntBASIC17.06■□□□□ 0.32
COL4A4P53420 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
COL4A4P53420 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC17.06■□□□□ 0.32
COL4A4P53420 GTF2H2C-215ENST00000514162 610 ntTSL 5 BASIC17.06■□□□□ 0.32
COL4A4P53420 AKIP1-210ENST00000534147 1022 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL4A4P53420 UEVLD-212ENST00000541984 755 ntTSL 3 BASIC17.06■□□□□ 0.32
COL4A4P53420 ACTG1P17-201ENST00000558391 1119 ntBASIC17.06■□□□□ 0.32
COL4A4P53420 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
COL4A4P53420 AL359711.2-201ENST00000563105 872 ntBASIC17.06■□□□□ 0.32
COL4A4P53420 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
COL4A4P53420 AL118558.3-201ENST00000607414 1079 ntBASIC17.06■□□□□ 0.32
COL4A4P53420 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL4A4P53420 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC17.06■□□□□ 0.32
COL4A4P53420 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
COL4A4P53420 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL4A4P53420 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC17.06■□□□□ 0.32
COL4A4P53420 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
COL4A4P53420 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL4A4P53420 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC17.05■□□□□ 0.32
COL4A4P53420 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC17.05■□□□□ 0.32
COL4A4P53420 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC17.05■□□□□ 0.32
COL4A4P53420 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC17.05■□□□□ 0.32
COL4A4P53420 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
COL4A4P53420 CA12-203ENST00000422263 2556 ntTSL 2 BASIC17.05■□□□□ 0.32
COL4A4P53420 AL022323.1-201ENST00000366110 957 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
COL4A4P53420 PKIG-203ENST00000372887 769 ntTSL 3 BASIC17.05■□□□□ 0.32
COL4A4P53420 RPL13A-201ENST00000391857 1181 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL4A4P53420 AC026954.1-201ENST00000429771 1293 ntBASIC17.05■□□□□ 0.32
COL4A4P53420 AC012441.1-201ENST00000446669 685 ntBASIC17.05■□□□□ 0.32
COL4A4P53420 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC17.05■□□□□ 0.32
COL4A4P53420 RPARP-AS1-201ENST00000473970 1297 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
COL4A4P53420 IFITM3-202ENST00000526811 543 ntAPPRIS ALT1 TSL 5 BASIC17.05■□□□□ 0.32
COL4A4P53420 COX14-203ENST00000550487 739 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL4A4P53420 SUOX-214ENST00000551841 906 ntTSL 3 BASIC17.05■□□□□ 0.32
COL4A4P53420 AC012568.1-201ENST00000558463 472 ntTSL 2 BASIC17.05■□□□□ 0.32
COL4A4P53420 AC120045.2-201ENST00000567334 178 ntBASIC17.05■□□□□ 0.32
COL4A4P53420 RN7SL190P-201ENST00000582519 257 ntBASIC17.05■□□□□ 0.32
COL4A4P53420 ATF5-205ENST00000600336 682 ntTSL 2 BASIC17.05■□□□□ 0.32
COL4A4P53420 AC005695.3-201ENST00000614522 232 ntBASIC17.05■□□□□ 0.32
COL4A4P53420 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
COL4A4P53420 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
COL4A4P53420 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
COL4A4P53420 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
COL4A4P53420 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
COL4A4P53420 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC17.05■□□□□ 0.32
COL4A4P53420 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 44.2 ms